Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f23r
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.55
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 28 1.3
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 2.9
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 2.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 3.9
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 26 3.9
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 5.1
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 5.1
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 5.1
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 6.8
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.0
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 51 RGRRHWNCSFQKTQCLP-THFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 209
+ +H+ S++ ++ +H+ + H S+Y R+ PG N DQS H
Sbjct: 184 KNHKHYENSYRPSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 512 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 369
P ++ V YL+ T+ T+P +L I M A+ + PS A + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 84 FGKSNSNDAYPVVLTSISSFTEWILKT 4
FG S +N PV L S SFT +++K+
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 275 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 382
PSDA T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 3.9
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 210 HDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGI-VSFGKSNSNDAYPVVLTSI 34
HD VVT + + L+ D + L NAL + V FGK+ SND L +
Sbjct: 587 HDLVVTVERHVSTLLADSSSIVRRSLL-------NALAPLCVFFGKAKSNDLILSHLITY 639
Query: 33 SSFTEWILK 7
+ T+W+L+
Sbjct: 640 LNDTDWMLR 648
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 426 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 524
H C +P+ I G RQ E ++H+A +D KI R
Sbjct: 11 HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 204 DHDPYTGSCSFLCWS 248
DH+PYT S S +C S
Sbjct: 91 DHEPYTASLSHICHS 105
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 204 DHDPYTGSCSFLCWS 248
DH+PYT S S +C S
Sbjct: 91 DHEPYTASLSHICHS 105
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Frame = +3
Query: 105 HFGRRQGHPSQYY----RSHGHHPGPNRRRICDQSRRDHDP 215
H+ S YY R HG P P RR + RR DP
Sbjct: 147 HYYHAGSESSAYYDSRSRLHGIQPPPKRRTLSPPPRRLADP 187
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 120 AFFQNALVGIVSFGKSNSNDAYPVVLTSISSFTEWILKTL 1
AF+ N++VG++ K+ + +IS FT LK+L
Sbjct: 505 AFYINSMVGLLLLTKNYQERLMDSRIDAISKFTHSYLKSL 544
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 586 LPFXCYLFPWRIXRSCIPSHYRWIFP 509
LP + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,943
Number of Sequences: 5004
Number of extensions: 63490
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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