Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f23r
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0648 - 19694538-19696569,19697151-19697998 30 1.7
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 30 1.7
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 3.0
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 4.0
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 28 7.0
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 27 9.2
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 27 9.2
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 27 9.2
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725... 27 9.2
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +1
Query: 157 TIPDQ-TGAEFVISHDAIMILILVPAVFFVGHN--EFELVEVAVRCTATLNGSSPSEQIN 327
T+P++ G++F I H + + + ++ G E E+ EVA+R A L+ + PS ++
Sbjct: 876 TVPERGCGSDFSI-HQLTSLKLFLVDIYCAGATAREVEVAEVAIRNHANLHPNHPSLEVR 934
Query: 328 KNTLGYYDTLLDN 366
K + T DN
Sbjct: 935 KFLKEHMATNEDN 947
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = -3
Query: 439 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYF 329
L GC+ N C R KYP C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 236 SLLVTMSSSLWRLPSDALPP*TVVPHPSRSTKIPWGITTP 355
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -3
Query: 439 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYF---C*SARMGN 305
L GC+ N C R +YP C P C NTPG F C +GN
Sbjct: 276 LLDGCQD--INECDESRFRYP--CSVPGTCVNTPGGFTCTCPDKTIGN 319
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 49 YGVGVIGIALSKRHNAYQRILEEGRGTQVSIIVVTATIPDQTGAEFVISHDAI 207
+GV G ++ A ++IL+ G +SII + + + D+ E+ + +D+I
Sbjct: 369 FGVACNGPTDNQSVEATEKILKRCGGIPLSIITIASLLVDKPAREWSVIYDSI 421
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 269 RLPSDALPP*TVVPH-PSRSTKIPWGITTPCWIIAPCWIF 385
+LPS +LPP PH P ST + T+PC P F
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSCF 45
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = -3
Query: 439 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC*SARMGNYRSRWQCI 281
++ GCE N C YP P C NT G F S GNY CI
Sbjct: 83 IKDGCED--INECLD-NVTYPC----PGICNNTMGSFTCSCHQGNYMENGTCI 128
>04_04_0350 +
24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 13 DPFSERTDAGEYYGVGVIGIALSKRHNAYQRILEEGRGTQVSIIVVTATIPDQTGAEFVI 192
DP ++ AG+ G V SKR + I+E+ R + + V +PD G + ++
Sbjct: 230 DPATD--SAGKIVGSQVKSNLKSKR----KTIIEKSRVSSDEVNVAKGLLPDNAGQKNIM 283
Query: 193 SHDAI 207
HD I
Sbjct: 284 KHDVI 288
>02_05_1253 +
35270040-35270044,35270213-35270297,35270809-35272590,
35272710-35273237
Length = 799
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 112 EEGRGTQVSIIVVTATIPDQTGAEFVISHDAIMILILV-PAVFFVGHNEFELVEV 273
EEG G +I + + D G + + +L+LV PA G +E E+VEV
Sbjct: 313 EEGTGAVAAIRMPMLKVSDFKGGTPEVIQTSYAVLVLVPPAGKSWGRHEMEIVEV 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,644,875
Number of Sequences: 37544
Number of extensions: 467760
Number of successful extensions: 1298
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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