Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f23r
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.27 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.27 
At1g01150.1 68414.m00024 expressed protein ; expression supporte...    31   0.47 
At5g62380.1 68418.m07829 no apical meristem (NAM) family protein...    29   3.3  
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    29   3.3  
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    28   5.8  
At3g06080.2 68416.m00695 expressed protein identical to unknown ...    27   7.7  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 331 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 435
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 331 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 435
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g01150.1 68414.m00024 expressed protein ; expression supported
           by MPSS
          Length = 345

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 24/106 (22%), Positives = 50/106 (47%)
 Frame = +1

Query: 232 VFFVGHNEFELVEVAVRCTATLNGSSPSEQINKNTLGYYDTLLDNSTLLDIWAEVDGMCY 411
           V +  + E  L E   + + T+N + P ++I +   G + T  ++S L D W  ++ +  
Sbjct: 235 VLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMNYLDL 294

Query: 412 SYDAHILVVILLRELGMVNGKVNIRYFTWLTTTGRSSDNATVCRIV 549
             +  I ++I++ E+G  NG+   R       + R+     +C +V
Sbjct: 295 -VEVEIDIIIVVAEIGDQNGEGKKRRSDEEDESNRNHPKIRICGMV 339


>At5g62380.1 68418.m07829 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           OsNAC7, Oryza sativa, EMBL:AB028186
          Length = 348

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 156 GRDYDNTDLGAPAFFQNALVGIVSFGKSNSNDAYPVVLTSISSFTEWILK 7
           G  Y   DL +P  FQ +    +S    N  D Y VVL++I++    I++
Sbjct: 190 GNYYHLPDLESPRMFQGSSSSSLSSLHQNDQDPYGVVLSTINATPTTIMQ 239


>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -1

Query: 234 NCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGIVSFGKSNSN 64
           +C   +   D  +T   FC  L  +  R        APA+  NAL   V+ G  N N
Sbjct: 175 DCGTLFSRKDSFITHRAFCDALAEESARFVSVPP--APAYLNNALDVEVNHGNINQN 229


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 284 ALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWIFGP 391
           A+PP ++  HPS  +   +G   P  I APC  + P
Sbjct: 134 AMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMP 169


>At3g06080.2 68416.m00695 expressed protein identical to unknown
           protein GB:AAF30301 from [Arabidopsis thaliana]
          Length = 469

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 114 RRQGHPSQYYRSHGHHPGPNRRRIC 188
           R+ GHPS YY    H P P  R+ C
Sbjct: 402 RKDGHPSLYYLG-PHGPAPLHRQDC 425


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 141 NTDLGAPAFFQNALVGIVSFGKSNSNDAYPVVLTSIS 31
           N  +G  AF  NA   +  FG   SN  YP  +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,673
Number of Sequences: 28952
Number of extensions: 351511
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)