Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f22r
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family...    30   1.3  
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ...    30   1.7  
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ...    30   1.7  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    29   4.0  
At4g12970.1 68417.m02026 expressed protein                             29   4.0  
At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr...    28   5.3  
At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr...    28   5.3  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   5.3  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    27   9.3  

>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
           protein
          Length = 161

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 469 MMCLLTSWTTPPLFPKEDPTRTLQTPTRSPIIQCAAVRTALLLRMEQPHP--CHH 627
           + C+   ++ P   P + P +T+QTPT +     +  +   L+R +Q  P  C H
Sbjct: 23  LCCITDCFSEPATRPHKSPPQTIQTPTPARSHSQSGSQQPPLIRRKQQQPLACQH 77


>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 365 AGSNYNLADNQVVWAAGWGSTRTGSGFAEQLRHVQVWTINQAICRERYSRI 213
           A SNYN A  +V+   G GS         ++  V+ W +N  I   R S +
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPV 162


>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 365 AGSNYNLADNQVVWAAGWGSTRTGSGFAEQLRHVQVWTINQAICRERYSRI 213
           A SNYN A  +V+   G GS         ++  V+ W +N  I   R S +
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPV 162


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 68  HFHKRIPTSTPRRRHRCGIEDHRNHLHTD 154
           H H    TS PR R RCG+   +   HT+
Sbjct: 578 HVHPLFLTSKPRERRRCGVCKKKPLSHTE 606


>At4g12970.1 68417.m02026 expressed protein 
          Length = 102

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/61 (22%), Positives = 22/61 (36%)
 Frame = +3

Query: 480 VDLMDNTSTISKRRSYANSPNTDTISYNTMCGCKDGSVIENGTATSLPPLGHIARKKCCC 659
           V L+     ++ RR +       T +YN   GC+     E        P+      +C C
Sbjct: 41  VSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAYHYRCVC 100

Query: 660 H 662
           H
Sbjct: 101 H 101


>At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 47  HLLQGRMHFHKRIPTSTPRRRHRCGIEDHR-NHLHTDRGRRRQ 172
           HLL   M   KR    T   ++   IE+ R NH+  +R RRRQ
Sbjct: 97  HLLPQEMTREKRKRRKTKPSKNNEEIENQRINHIAVERNRRRQ 139


>At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 358

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 47  HLLQGRMHFHKRIPTSTPRRRHRCGIEDHR-NHLHTDRGRRRQ 172
           HLL   M   KR    T   ++   IE+ R NH+  +R RRRQ
Sbjct: 148 HLLPQEMTREKRKRRKTKPSKNNEEIENQRINHIAVERNRRRQ 190


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 341  RQGCNWNPQYELAARYYVRSLSVKLYA*LQYQRPLYD 451
            + G N  PQY L + Y     ++K  A   +Q+ LYD
Sbjct: 962  QDGANQKPQYSLRSLYRALEYAIKAEAIGGFQKALYD 998


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P46100
           Transcriptional regulator ATRX {Homo sapiens}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain;
           non-consensus GC donor splice site at exon boundary
           28614
          Length = 1457

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 465 VDDVPVDLMDNTSTISKRRSYANSPNTDTISYNTMCGCKDGSVIENGTATSLPPLGHI 638
           +DD  V L  N +T +  +    SP T T  +N+    ++     N     + P  HI
Sbjct: 377 MDDDSVYLDGNNTTPNFAKDQVKSPETSTQVHNSEVNIEENGNFSNSDVDKMTPSTHI 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,131,733
Number of Sequences: 28952
Number of extensions: 329211
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)