Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f22f
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534...    29   2.6  
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200     29   4.6  
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497     29   4.6  
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344...    29   4.6  

>01_05_0770 -
           25052100-25052525,25052718-25053042,25053220-25053464,
           25053582-25054061
          Length = 491

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +1

Query: 328 IHPNYNHRTKDADIAIMRTVLR-----INFVRNTVQPARIAGSNY 447
           +HP + HR ++    I+  VLR     I FVR T +   I G  Y
Sbjct: 339 MHPEWQHRAREEVTMILYEVLRLYPPGIGFVRQTYKEMEIGGVKY 383


>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
          Length = 405

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 351 TMIVIRVDDVPVDLMDNTSTISKRRSYANSPNTDTIS-YNTMCGCKDGSVIENGT 190
           +++ I  D   +DL D  S  +K RSY +  + DT+  Y T+   +  S+IE  T
Sbjct: 289 SLVQITPDGEEIDLDDEESNPNKLRSYVSRLDADTLQRYATIRSKEAVSLIEKQT 343


>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
          Length = 405

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 351 TMIVIRVDDVPVDLMDNTSTISKRRSYANSPNTDTIS-YNTMCGCKDGSVIENGT 190
           +++ I  D   +DL D  S  +K RSY +  + DT+  Y T+   +  S+IE  T
Sbjct: 289 SLVQITPDGEEIDLDDEESNPNKLRSYVSRLDADTLQRYATIRSKEAVSLIEKQT 343


>04_04_0200 - 23529497-23531938,23532586-23533720,23534272-23534463,
            23535527-23535570
          Length = 1270

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 300  TSTISKRRSYANSPNTDTISYNTMCGCKDGSVIENGTATSLPPLG-HIARKKCCCHC 133
            ++++   R+  + P   T+S  T+     GS  +   +T L   G  +  K CCC+C
Sbjct: 895  STSLRDSRTNRSEPGPSTVSLPTVEERVSGSSNQETKSTPLAREGEQLPEKSCCCNC 951


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,951,636
Number of Sequences: 37544
Number of extensions: 434457
Number of successful extensions: 1346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)