Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f21f
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13) 277 4e-75
SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064) 29 4.3
SB_4346| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 4.3
SB_29776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49) 28 5.7
SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01) 28 5.7
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 28 7.5
SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048) 28 7.5
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 28 7.5
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 27 9.9
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
Length = 348
Score = 277 bits (680), Expect = 4e-75
Identities = 130/209 (62%), Positives = 161/209 (77%), Gaps = 2/209 (0%)
Frame = +3
Query: 24 YVAENMELIKLSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDP 203
+++ M L+ SL I + ALYFH+ E E+KCFIEEIPD+T VI YK +LYD
Sbjct: 127 FISYKMRLVV--SLAFIGYMLGNVQALYFHMGETEKKCFIEEIPDETMVIGKYKTQLYDE 184
Query: 204 KSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSW-- 377
F+ ++PGIGMHVEV+DPN +I++S+ YS EG +FTS TPGEHVIC++SNST W
Sbjct: 185 NIKDFLPSSPGIGMHVEVKDPNGKIIMSKYYSSEGRFTFTSHTPGEHVICLHSNSTRWSL 244
Query: 378 FSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREER 557
++G +LR+HLDIQVGEHA DYA +A K+KLTELQLRIRQLLDQV QI+KEQ YQR REER
Sbjct: 245 WAGGRLRIHLDIQVGEHANDYAQIAAKDKLTELQLRIRQLLDQVEQISKEQNYQRFREER 304
Query: 558 FRQTSESTNQRVLWWSLLQTGVLVIIGYW 644
FR TSESTNQRVLWW+L QT +L+ G+W
Sbjct: 305 FRMTSESTNQRVLWWALAQTVILLATGFW 333
>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 74.9 bits (176), Expect = 5e-14
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 3/187 (1%)
Frame = +3
Query: 21 IYVAENMELIKLSSLLVIALLAD---CASALYFHIAEGERKCFIEEIPDDTTVIVNYKVE 191
+++ E+ + ++ LLV L+ + AS+L F ++ G RKC EE+ D V+V +
Sbjct: 51 VFLQESWNMKSITVLLVPLLICEYILSASSLSFTLSSGNRKCLKEEVHKD--VLVTGEFT 108
Query: 192 LYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNST 371
L D P +++V D + R + +G +FT+ + +C + + T
Sbjct: 109 LSD---------APQQKTNLKVTDSTGHVFYKRDDATKGKFAFTTDDYDMYEVC-FDSET 158
Query: 372 SWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQRE 551
S GS V ++I+ G A +Y ++A+ EKL +++ +++L D I + AY RQRE
Sbjct: 159 SHGGGSDREVSINIKHGVEAKNYEDLAKAEKLKPMEVELKRLEDLGDAIVNDFAYMRQRE 218
Query: 552 ERFRQTS 572
+ R T+
Sbjct: 219 QEMRDTN 225
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +3
Query: 399 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 572
V ++I+ G A Y N+AQ EKL ++L +R+L D +I AY R+REE R T+
Sbjct: 236 VSINIKHGTEAKAYQNLAQAEKLKPIKLAMRRLEDMADEIVSSFAYFREREEEQRNTN 293
>SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 60.9 bits (141), Expect = 9e-10
Identities = 38/146 (26%), Positives = 70/146 (47%)
Frame = +3
Query: 192 LYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNST 371
+++ GGF+ + V++ P+ +++ S G +F + G + C +SN
Sbjct: 4 IFEVAEGGFLD------IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYC-FSNKM 56
Query: 372 SWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQRE 551
S + L+ +DI + A +KL+E+ + QL + + + EQ Y RE
Sbjct: 57 STMTPKVLKFSMDIGEAPKDTSKEDNAGHDKLSEM---VSQLSEAMTGVKHEQEYMEVRE 113
Query: 552 ERFRQTSESTNQRVLWWSLLQTGVLV 629
R +++TN RV+WWS ++ VLV
Sbjct: 114 RIHRSINDNTNSRVVWWSFFESLVLV 139
>SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 42.7 bits (96), Expect = 2e-04
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 13/191 (6%)
Frame = +3
Query: 96 SALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPK-----SGGFMQTTPGIGMHVEV- 257
S F + G+R CF E I + T+ V Y+V Y K +G F G +++
Sbjct: 33 SGFTFRVDPGKRDCFYETIKRNVTLDVEYQVCAYVYKRHYCGNGMFDNNLVIEGGDLDIG 92
Query: 258 ---RDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEH 428
+ P+ +I + + + S + GE+ C + N+ S + + L + +
Sbjct: 93 FTLQAPSGKIAIEDGHRTDEAHSLVTEEEGEYEFC-FDNTFSTVASKAIFADLGVDFEDD 151
Query: 429 AVDYANVAQKEKLTELQLRIRQLLDQVH-QITKEQAYQR---QREERFRQTSESTNQRVL 596
+ + +L R + L+ V + K + Q R + ++S + RV
Sbjct: 152 IQKMIGIKDENLEEDLHDRFVRTLENVRVDLDKAEHIQNFISSAAARDFRLAKSKDSRVF 211
Query: 597 WWSLLQTGVLV 629
WWSL+Q+ L+
Sbjct: 212 WWSLIQSVALI 222
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +3
Query: 399 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 578
V +DIQ EH + + ++L E QLR+ +L Q HQ+ KE ++Q +ER + +
Sbjct: 215 VVVDIQKNEHQ---QRLLELQRLQEEQLRLTELEIQEHQLKKELILKKQEQERQKLLQQL 271
Query: 579 TNQ 587
N+
Sbjct: 272 RNE 274
>SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 33.5 bits (73), Expect = 0.15
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 48 IKLSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQT 227
+ + L + +L C L F + + R+CF EE+ D + ++V +GG
Sbjct: 9 VTFTVLALSCILVSCTE-LTFELEDNARQCFYEELKKDAKATLEFQV-----ITGG---- 58
Query: 228 TPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHL 407
+ V + D N++ L S +FT PG + C +SN S S V+
Sbjct: 59 --NYDVDVILYDINEKELYSVQKKQYDSHTFTVEQPGIYKFC-FSNEFSTI--SHKTVYF 113
Query: 408 DIQVGE 425
D Q GE
Sbjct: 114 DFQSGE 119
>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
Length = 197
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/45 (26%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +3
Query: 444 NVAQKEKLTELQL---RIRQLLDQVHQITKEQAYQRQREERFRQT 569
++ +KE L ++Q+ +++++ Q ++ K++ +R+ EERF +T
Sbjct: 9 SLREKELLEKIQMEQEKLQRIKQQQLELEKQERLEREEEERFNKT 53
>SB_4346| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 189
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 432 VDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQRE-ERFRQTSESTNQR 590
V+ ++ + + +LQ R+R + +Q QITKE Y+ +E R +T ++ QR
Sbjct: 67 VEQHDLTDRSTVEQLQSRLRSVEEQNRQITKE--YEENKELLRLAETEKNILQR 118
>SB_29776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 423 EHAVDYANVAQKEK-LTELQLRIRQLLDQVHQITKEQA-YQRQREERFRQTSESTNQR 590
E + + ++E+ LTE Q +++ D+ +T+EQA +R RE T E N +
Sbjct: 181 EEQANAKRIRERERPLTEEQANAKRIRDKERTLTEEQANAKRIRERGHTSTEEQANAK 238
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 423 EHAVDYANVAQKEK-LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ-TSESTNQR 590
E + + KE+ LTE Q +++ ++ +T+EQA ++ ER R T E N +
Sbjct: 45 EEQANAKRIRDKERPLTEEQANAKRIRERERTLTEEQANAKRIRERERPLTEEQANAK 102
>SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49)
Length = 440
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 450 AQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSEST 581
A KEK ++ L RQ LDQ+H + +RQR E+ ++ ST
Sbjct: 261 AMKEKDVKM-LGYRQALDQLHGQLLDAREERQRAEQILESRYST 303
>SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01)
Length = 317
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 423 EHAVDYANVAQKEKLTELQLRIRQLLDQVH--QITKEQAYQRQREERFRQTSESTNQRVL 596
+H + N+ E L + + +Q + + Q +E+A +++REE + E N+R
Sbjct: 55 QHETEINNIGLNEFLEHEKKKWKQTEQEKNSFQTQREEALRKRREEEEKILIEQHNKRTE 114
Query: 597 WWSLLQ 614
W + +Q
Sbjct: 115 WQTKMQ 120
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 459 EKLTELQLRIRQLLDQVHQITKE-QAYQRQREERFRQTSESTNQ 587
++ T L IR+L +VHQ+T+E +A Q R + ++ E T++
Sbjct: 307 QQTTATGLVIRELEGRVHQLTQESEALQESRTKLAKEKEELTDK 350
>SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)
Length = 250
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +3
Query: 324 SSTPGEHVICMY--SNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQL 497
+S PG +C+ + S L +HL V ++A ++ A K +Q+
Sbjct: 2 ASDPGNQTVCVCPPGEREDFDSFPVLLLHLKRIVADNAEYFSKYAHKAVYKRFHESFKQI 61
Query: 498 LDQVHQITKEQAYQRQREERF 560
LD + + + Y QR F
Sbjct: 62 LDSIGSMEELSTYLAQRVTLF 82
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 396 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQ-AYQRQREER 557
R H + G+ + AN K ++TEL L+++ + + +E +YQR+ E+
Sbjct: 313 RAHHVTRRGKDEAEKANFKLKTEVTELNLKLKSYQQENEDLNQEVISYQRKVSEK 367
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 453 QKEKLTELQLRIRQLLDQVHQITKEQAYQRQR--EERFRQTSESTNQR 590
++ + EL L+ RQ ++ + +EQ QRQR EER RQ E+ QR
Sbjct: 603 ERRRQQELLLQ-RQREEEEMRRQQEQMLQRQREEEERRRQQEEAERQR 649
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/68 (22%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +3
Query: 399 VHLDIQVGEHAVDYANV---AQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 569
+ D++ A++ AN A +EKL++++ +I++L + + ++T + + +Q
Sbjct: 3484 IFCDVEPKRKALEAANAELAAAEEKLSKIKAKIQELDENLAELTANFERATSEKLKCQQE 3543
Query: 570 SESTNQRV 593
+EST + +
Sbjct: 3544 AESTAKTI 3551
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,460,434
Number of Sequences: 59808
Number of extensions: 424685
Number of successful extensions: 1143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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