Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f21f
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar ... 85 3e-17
At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar ... 83 2e-16
At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar ... 83 2e-16
At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar ... 82 3e-16
At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar ... 70 2e-12
At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar ... 68 5e-12
At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ... 65 4e-11
At2g03040.1 68415.m00257 transmembrane protein-related low simil... 58 7e-09
At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar ... 55 4e-08
At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containi... 36 0.023
At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containi... 29 2.0
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo... 29 2.0
At2g25790.1 68415.m03095 leucine-rich repeat transmembrane prote... 29 2.6
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 28 4.6
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 28 6.1
>At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 217
Score = 85.4 bits (202), Expect = 3e-17
Identities = 52/191 (27%), Positives = 92/191 (48%)
Frame = +3
Query: 63 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 242
L ++ ++ A++ + KC EEI + V+ +Y + D + P I
Sbjct: 18 LFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDH------EVMPTIS 71
Query: 243 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 422
V+V P L + G +FT+ G ++ C +++ S + +++D + G
Sbjct: 72 --VKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKS-HGNKNVSINIDWRTG 128
Query: 423 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWW 602
A D+A++A+KEK+ ++L IR+L V I + Y R RE R SE TN RV W+
Sbjct: 129 IAAKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWY 188
Query: 603 SLLQTGVLVII 635
S++ GV + +
Sbjct: 189 SIMSLGVCIAV 199
>At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105:
emp24/gp25L/p24 family
Length = 214
Score = 82.6 bits (195), Expect = 2e-16
Identities = 48/189 (25%), Positives = 94/189 (49%)
Frame = +3
Query: 63 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 242
LL++A+ + + +L+F + G KC E+I ++ + Y ++ +P G + T I
Sbjct: 12 LLILAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNID--NPHEGQALPQTHKIS 69
Query: 243 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 422
+ V N+ +V S G +F++ G+++ C + L + + + G
Sbjct: 70 VKVTSNSGNNYHHAEQVDS--GQFAFSAVEAGDYMACF--TAVDHKPEVSLSIDFEWKTG 125
Query: 423 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWW 602
+ +ANVA+K ++ ++ ++ LLD V+ I +E Y R REE + + STN ++ W
Sbjct: 126 VQSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWL 185
Query: 603 SLLQTGVLV 629
S+L V +
Sbjct: 186 SVLSFFVCI 194
>At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile PF01105: emp24/gp25L/p24
family
Length = 216
Score = 82.6 bits (195), Expect = 2e-16
Identities = 53/194 (27%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Frame = +3
Query: 60 SLLVIALLADCASALYFHI-AEGERKCFIEEIPDDTTVIVNYKV-ELYDPKSGGFMQTTP 233
++++ L + A++ I G KC EEI + V+ +Y V + ++P++ TP
Sbjct: 14 TVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPEN------TP 67
Query: 234 GIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDI 413
+ +V P L + G +FT+ G ++ C + +S+ + + + + +D
Sbjct: 68 AVSS--KVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLA-NPITLGVDW 124
Query: 414 QVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRV 593
++G A D+ +VA+KEK+ ++L++R+L V I + Y + RE R+ SE+TN RV
Sbjct: 125 KMGIAAKDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRV 184
Query: 594 LWWSLLQTGVLVII 635
W+S++ GV V++
Sbjct: 185 AWFSIMSLGVCVVV 198
>At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 82.2 bits (194), Expect = 3e-16
Identities = 52/194 (26%), Positives = 93/194 (47%)
Frame = +3
Query: 54 LSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTP 233
L S L+ +L C A++ + KC EEI + V+ +Y L + T
Sbjct: 11 LLSALIFSLSPIC-EAVWLTVPHTGSKCVSEEIQSNVIVLADY---LVISEEHSIFPT-- 64
Query: 234 GIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDI 413
+ V+V P +L R + G +FT+ G ++ C +++ S +++D
Sbjct: 65 ---VSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKS-HGNKDFSINIDW 120
Query: 414 QVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRV 593
+ G A D+ ++A+KEK+ ++L ++L V I + Y R RE R SE TN RV
Sbjct: 121 KTGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRV 180
Query: 594 LWWSLLQTGVLVII 635
W+S++ G+ +++
Sbjct: 181 AWYSIMSLGICIVV 194
>At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 69.7 bits (163), Expect = 2e-12
Identities = 43/191 (22%), Positives = 87/191 (45%)
Frame = +3
Query: 63 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 242
LL++++L+ ++ + + G KC EEI + I Y + +P + ++ +
Sbjct: 10 LLILSILSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSI--INPHEDHPLPSSHKVT 67
Query: 243 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 422
V V P G SF + G+++ C ++ + L + D + G
Sbjct: 68 --VRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCF--SAVDHKPETTLIIDFDWRTG 123
Query: 423 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWW 602
H D++NVA+K ++ ++ +++L + V+ I E Y R REE + +TN ++ W
Sbjct: 124 IHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWL 183
Query: 603 SLLQTGVLVII 635
S + V + +
Sbjct: 184 SFVSLAVCLSV 194
>At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 214
Score = 68.1 bits (159), Expect = 5e-12
Identities = 43/183 (23%), Positives = 87/183 (47%)
Frame = +3
Query: 63 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 242
LL +A+ + + +L+F + G KC E+I ++ + Y V +P + I
Sbjct: 12 LLFLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTV--VNPNEAHPSPQSHKIS 69
Query: 243 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 422
+ V N V S G +FT+ G+++ C + L + D + G
Sbjct: 70 IRVTSSYGNTYHHAEDVES--GQFAFTAVESGDYMACY--TAVDHKPEVTLSIDFDWRTG 125
Query: 423 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWW 602
+ +++VA+K ++ ++ +++L++ V+ I +E Y R+REE + + +TN ++ W
Sbjct: 126 VQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWL 185
Query: 603 SLL 611
S L
Sbjct: 186 SFL 188
>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 170
Score = 64.9 bits (151), Expect = 4e-11
Identities = 34/119 (28%), Positives = 63/119 (52%)
Frame = +3
Query: 249 VEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEH 428
V+V P + L G SFT+ G +V C+ + + + L + D + G H
Sbjct: 26 VKVMPPQGKNLHEADKVEAGQFSFTAYENGSYVACI--TAIDYKPETTLTIDFDWKTGVH 83
Query: 429 AVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWS 605
+ ++ NVA+K ++ ++ +++ L+D V I +E Y R+REE ++ + STN ++ W S
Sbjct: 84 SKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLS 142
>At2g03040.1 68415.m00257 transmembrane protein-related low
similarity to SP|Q28735|TM21_RABIT Transmembrane protein
Tmp21 precursor (21 kDa Transmembrane trafficking
protein) (Integral membrane protein p23) {Oryctolagus
cuniculus}
Length = 166
Score = 57.6 bits (133), Expect = 7e-09
Identities = 41/162 (25%), Positives = 77/162 (47%)
Frame = +3
Query: 63 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 242
LL+IALL+ ++ + + + KC EEI ++ I Y + +P
Sbjct: 10 LLIIALLSPRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFI--VNPNEDHH-PLPDSHK 66
Query: 243 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 422
+ V+V P + L G SFT+ G +V C+ + + + L + D + G
Sbjct: 67 IIVKVMPPQGKNLHEADNVEAGQFSFTAYENGSYVACI--TAIDYKPETTLTIDFDWKTG 124
Query: 423 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQR 548
H+ ++ NVA+K ++ ++ +++ L+D V I +E Y R+R
Sbjct: 125 VHSKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166
>At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105
emp24/gp25L/p24 family
Length = 204
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/163 (23%), Positives = 73/163 (44%)
Frame = +3
Query: 123 GERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSRVYSL 302
G KC ++I + + Y + +P G + P + V V P +
Sbjct: 22 GNTKCISDDIKTNYMTVGTYSI--VNPNEGHHLP--PSHKLFVTVSSPKGKSHHHAENVE 77
Query: 303 EGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQL 482
G FT+ G+++ C + + ++ V + + G A D+ +A++ ++T L++
Sbjct: 78 SGKFVFTAEETGDYMTCFVA--PGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQITMLEV 135
Query: 483 RIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLL 611
+R+LLD I +E +RE ++ + STN R+ SLL
Sbjct: 136 EVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLL 178
>At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 643
Score = 35.9 bits (79), Expect = 0.023
Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 3/160 (1%)
Frame = +3
Query: 138 FIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPN---DRILLSRVYSLEG 308
FI ++P T IV ++ L S G ++ + + DPN D +LLS Y+ G
Sbjct: 429 FICQMPIPPTAIV-WRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAG 487
Query: 309 MISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRI 488
+S ++ +T+W + GE ++ EKL E+ LR+
Sbjct: 488 KWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKG-IDIEAHEKLKEIILRL 546
Query: 489 RQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSL 608
+ ++ Y + EE+ Q S+ + + L ++L
Sbjct: 547 KDEAGYTPEVA-SALYDVEEEEKEDQVSKHSEKLALAFAL 585
>At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 740
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -3
Query: 372 KCY*STCILHVHQECWM*MRSFLPTNRLETTVFYHSDRGLQRACLCPVLFA*IRQISDRI 193
+C CI + CW M S N L+T R Q A LCP + +
Sbjct: 437 ECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETS-FATVLSSC 495
Query: 192 TRLCNLL 172
+RLC+LL
Sbjct: 496 SRLCSLL 502
>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
boundaries domain protein 1 (LBD1) identical to
SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
Length = 190
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +3
Query: 402 HLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQR------EERFR 563
HL QV E A AQ E + +Q + LL+ ++ + ++Q ++ + F
Sbjct: 114 HLQRQVSELQAQLAK-AQVE-MVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFL 171
Query: 564 QTSESTNQRVLWWSLLQT 617
+ +TN +LWW L T
Sbjct: 172 EDKSNTNSSMLWWDPLWT 189
>At2g25790.1 68415.m03095 leucine-rich repeat transmembrane protein
kinase, putative
Length = 960
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 364 LEYMHITCSPGVLDVNEIIPSNE*TRDNSILSFGSRTSTCMPMPGVVCMN 215
L ++H CSP V+ N + P +N ++ C+ +PG++CM+
Sbjct: 789 LRFLHCRCSPAVVAGN-LSP------ENIVIDVTDEPRLCLGLPGLLCMD 831
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 132 KCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPNDRILLSR 290
K ++EE D I +EL+D +SG ++ + +++ V P++ L SR
Sbjct: 629 KGYLEEEADLQEAIKKSLLELHDKESGDVLEENQSVRVNLVVDKPSEDSLCSR 681
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 231 PGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNS 368
P +G V V DP++ + V + G T G+HV+ SN+
Sbjct: 7 PSVGSFVWVEDPDEAWIDGEVVQVNGDEIKVLCTSGKHVVTKISNA 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,953
Number of Sequences: 28952
Number of extensions: 280117
Number of successful extensions: 806
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -