Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f20r
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    30   0.43 
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   4.0  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   4.0  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 629 RPARALATSSVQYFCEVHISYLLFIIYNINVEHVASLIHSIPYYKSNLI 775
           RP  AL T S+ Y C+      L +I +   E++ +L++ I   K NL+
Sbjct: 561 RPRIALLTFSLDYACDEQRILSLDLIISQQEEYIINLVNRICMLKPNLV 609


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 272 PPSACGRLHCAANVTRLVTSRINTFQSNRQQQTIYKLL 385
           PPS C R H + +   + T+ +N  Q +R      ++L
Sbjct: 746 PPSGCSRNHTSNSYKIIATNEMNRQQGSRDSYITSRML 783


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 496 INRGSCFFCLSETSIA 543
           +  GSCFFCLS  ++A
Sbjct: 342 VGPGSCFFCLSNPNVA 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,702
Number of Sequences: 5004
Number of extensions: 47769
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)