Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f20r
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973...    31   1.3  

>12_02_0780 +
           23094989-23095380,23096132-23096573,23096687-23097311,
           23098240-23098280,23098371-23098439,23098779-23098879,
           23099422-23099500,23099946-23100044,23100123-23100191,
           23100283-23100332,23100416-23100497,23100997-23101091,
           23101263-23101395
          Length = 758

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 322 SDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNI 429
           SDV  K  SKQ+ +   +Q F +  ++M++   PNI
Sbjct: 500 SDVAVKVFSKQEYSEEVIQTFRQEVSLMKKLRHPNI 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,450,179
Number of Sequences: 37544
Number of extensions: 272913
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)