Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f20f
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)             143   1e-34
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            31   0.62 
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   30   1.4  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)                      28   5.7  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score =  143 bits (347), Expect = 1e-34
 Identities = 68/94 (72%), Positives = 82/94 (87%)
 Frame = +1

Query: 370 KKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFV 549
           +KDNVAGV LPIFE   DG+++YEL GL+RGGQQL+K ++ +  AVKLLVELASLQTSFV
Sbjct: 2   RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELASLQTSFV 61

Query: 550 TLDEVIKITNRRVNAIEHVIIPRLERTLAYIISE 651
           TLDE IK+TNRRVNAIEHVIIPR+E T++YI+ E
Sbjct: 62  TLDEAIKLTNRRVNAIEHVIIPRIENTVSYILGE 95


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 76  IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRM---ILSKIIETK 246
           I+MSG+        RG  +LI     G   G GLLK  AD L   F +   ++  ++  +
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLLRVE 164

Query: 247 TLMGEVMKEAAF 282
            +  E+M E +F
Sbjct: 165 EINPEIMLEKSF 176


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 441 VGWFGPWWAAACKAEEEL 494
           VGWF P W  AC AE +L
Sbjct: 341 VGWFAPPWVRACMAEYQL 358


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = -3

Query: 641  MYASVRSSRGMITCSMALTRLFVILITSSRVTNEVCSEANSTKSFTALWKFFFSFASCCP 462
            +Y SVR    +  CS A T LF     S RV + VCS     + FT L+  F      C 
Sbjct: 947  VYLSVRVCSPV--CSRAFTSLFACFPMSVRVCSPVCS-----RVFTCLFACFHLSVRVCS 999

Query: 461  P 459
            P
Sbjct: 1000 P 1000


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 522 LDQKLYSALEVLLQLCKLLPTTGQTSQLVGIRTILV 415
           +D  + SA+E+ +  C+ + T   T  L+GI T+L+
Sbjct: 659 VDDLMTSAIELAMNECRWIKTDKSTLILIGIFTVLI 694


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 466 QQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLA 636
           QQL+KL   + S  +L   LASLQ + + + E  K     V+ + H I    +R +A
Sbjct: 604 QQLSKLNAEYMSLCQLKTMLASLQNAGMGIIEKNKDDPTTVDELTHKIQEVTDRYVA 660


>SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)
          Length = 233

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
 Frame = +1

Query: 139 KGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDF 318
           K +L  A+  + L K K      ++++  +K    K      +  A + LA+AK+   + 
Sbjct: 43  KSKLQLAIAKYKLAKAKYKLANAKYKLAKAKYKPAKAKYK--LANAKYKLAKAKYKLANA 100

Query: 319 NQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQ 498
                  + KA+ K+   K   A         Y+     Y+LA LA    +LAK K    
Sbjct: 101 KY----KLAKAKYKVAKAKYKFANA------KYKLAKAKYKLAKLAIAKYKLAKAKYKLA 150

Query: 499 SA-VKLLVELA 528
           +A  KL+V +A
Sbjct: 151 NAKYKLVVLIA 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,963,097
Number of Sequences: 59808
Number of extensions: 410595
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)