Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f20f
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   197   5e-51
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    32   0.29 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           31   0.88 
At3g19190.1 68416.m02436 expressed protein                             29   2.0  
At1g33230.1 68414.m04106 expressed protein                             29   2.7  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    28   6.2  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    28   6.2  
At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    27   8.2  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  197 bits (481), Expect = 5e-51
 Identities = 97/192 (50%), Positives = 139/192 (72%), Gaps = 2/192 (1%)
 Frame = +1

Query: 82  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 258
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 259 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDT 435
           ++MK ++F+L E K+  GD    VVL+NV +A +K+RS+ +N+AGV LP F+ + +G   
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 436 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 615
            +L GLARGGQQ+   +  +  A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ P
Sbjct: 121 NDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 616 RLERTLAYIISE 651
           +LE T++YI  E
Sbjct: 181 KLENTISYIKGE 192


>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 112 PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 291
           PS+G      G + G + G GLL   A  +    R    +  + + L+G  +K   F+ +
Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685

Query: 292 EAKFTTGDFN 321
           E K  T DF+
Sbjct: 686 ELKSATQDFD 695


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +1

Query: 301 FTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAK 480
           F   D   +  Q   + Q     ++ +VAG  +P++ES    S+ +   G + GG+ L  
Sbjct: 46  FDRSDSPNLTTQQKQEHQRVEMDEESSVAGGRIPVYESAGMLSEMFNFPGSSGGGRDL-D 104

Query: 481 LKKNFQSAVKLLVE 522
           L ++F+S  +LL E
Sbjct: 105 LGQSFRSNRQLLEE 118


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 542 EVCSEANSTKSFTALWKFFFSFASCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 375
           EV  + ++ + F  LWK F SF S C P    ++     P+   + +    PATLS
Sbjct: 309 EVRFQPSTIRWFLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363


>At1g33230.1 68414.m04106 expressed protein
          Length = 347

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -2

Query: 591 VDTSIRDLNNLVESDK*SLQ*S*LDQKLYSALEVLLQLCKLLPTTGQTSQLV 436
           VD+SIR L++ + SDK       LD KL+  LE  LQ  + +   G TS  +
Sbjct: 43  VDSSIRRLHSTLASDK------HLDPKLFEKLEEDLQRARCMLADGDTSSFL 88


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 430 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 606
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 607 IIPRLERTLAYIIS 648
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 430 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 606
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 607 IIPRLERTLAYIIS 648
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 297 SFSQRESSFFHHFTHKGF--SLNDFAQDHTEPHLKGI 193
           SFS R SS     T   F  S++ FAQD+  PH + I
Sbjct: 21  SFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERI 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,379
Number of Sequences: 28952
Number of extensions: 290592
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)