Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f18r
(519 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) 33 0.11
SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7) 31 0.43
SB_27284| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39) 30 1.00
SB_27127| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_9474| Best HMM Match : EGF (HMM E-Value=2e-08) 30 1.3
SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_7840| Best HMM Match : S-antigen (HMM E-Value=0.11) 29 1.7
SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10) 28 4.0
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 28 4.0
SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0) 27 7.0
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 37.5 bits (83), Expect = 0.007
Identities = 29/106 (27%), Positives = 43/106 (40%)
Frame = +3
Query: 159 FRDNGAFFSLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSN 338
FRD G GDNNG G D G + G +D V +D ++ SG
Sbjct: 111 FRDGGKVDVSGGDNNGSGDDDGGGSGSGGSSDDGGSGDNNNGVSSDDDDGSGSGGSSDDG 170
Query: 339 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNEE 476
+G ++ +S S G + DD C + GG +S D + +
Sbjct: 171 GSGDNNNGVSSSDYGGSGDNDDGVCNDDDGGGSNSGDDDGGSVHND 216
>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
Length = 167
Score = 33.5 bits (73), Expect = 0.11
Identities = 23/87 (26%), Positives = 41/87 (47%)
Frame = +3
Query: 210 GFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGK 389
G D +++N + S I+ + +N ++ L+ C+ +D GG +D VG
Sbjct: 54 GQDVTSIMSNGEIHKHSQIAYGWLKKYNIGRLQAELS-CNGDDDGGGNNDDDGVDDGVGG 112
Query: 390 REIDDFGCENGLGGVGDSHSYDSNESN 470
DD G ++ GGVGD D ++ +
Sbjct: 113 GGGDDSGGDDDGGGVGDDDDDDDDDDD 139
>SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)
Length = 256
Score = 31.5 bits (68), Expect = 0.43
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +3
Query: 192 GDNNGVGFDFIGLVNNDGLRNDSSISSWL-VHVHNDLNERSGLAWCDWSNDNGGGHDWLS 368
GD G +D IG N+D ND + + ND ++ D ++D GG D +
Sbjct: 140 GDGGGNDYDDIGDGNDDDDENDDDNNDDDDIGDDNDNDDYDD----DDNDDGGGNDDDIG 195
Query: 369 DSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNEE 476
D + DD +NG G G+ D + N++
Sbjct: 196 DDNDDDDDDDDDGHDDNGGDGGGNDDDDDIGDGNDD 231
>SB_27284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 31.1 bits (67), Expect = 0.57
Identities = 35/106 (33%), Positives = 47/106 (44%)
Frame = +3
Query: 156 GFRDNGAFFSLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWS 335
G D+G F GD++G G D G V +DG D D ++ G+ D
Sbjct: 66 GDNDSGGFGDDGGDDSG-GDDDSGGVGDDG--GDGG---------GD-DDSGGVG--DDG 110
Query: 336 NDNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNE 473
D+GGG D DS VG DD G ++ GGVGD D ++
Sbjct: 111 GDDGGGDD---DSGGVGDDGGDDGGGDDDSGGVGDDGGDDGGGDDD 153
>SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 327 DWSNDNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNEE 476
D+ +DN G + D G E DD G + VGD++ YDS ++N++
Sbjct: 25 DYGSDNNGNDNNDDDD---GSNENDDDGSDEN-DYVGDNNDYDSGDNNDK 70
>SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 30.7 bits (66), Expect = 0.75
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 327 DWSNDNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNEE 476
D+ +DN G + D G E DD G + VGD++ YDS ++N++
Sbjct: 25 DYGSDNNGNDNNDDDD---GSNENDDDGSDEN-DYVGDNNDYDSGDNNDK 70
>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
Length = 1024
Score = 30.3 bits (65), Expect = 1.00
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Frame = +3
Query: 165 DNGAFFSLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDW---- 332
DNG + D+NGVG N G+ N + V ++D N G+ D
Sbjct: 102 DNGVGVGNYDDDNGVGVGNYDDDNGVGVGNYDDDNGVGVGNYDDDN-GVGVGNYDGDGGN 160
Query: 333 SNDNGGGHD-------WLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESN 470
+N NGGG D +DS + D G +G GG GD+ ++ ++S+
Sbjct: 161 NNGNGGGKDEDDNDGGGGADSNGDNNHDDDGNGVSDGDGGSGDNDNHRKSDSS 213
>SB_27127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 216 DFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAW---CDWSNDNGGGHDWLSDSTTVG 386
D G N DG RND+ + ND + R+ W DW ND G +D + T G
Sbjct: 55 DTDGRNNTDG-RNDTDWRND-TDWRNDTDGRNDTDWRNDTDWRNDTDGRNDTDGRNDTDG 112
Query: 387 KREID 401
+ +ID
Sbjct: 113 RNDID 117
>SB_9474| Best HMM Match : EGF (HMM E-Value=2e-08)
Length = 237
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 216 DFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAW---CDWSNDNGGGHDWLSDSTTVG 386
D G N DG RND+ + ND + R+ W DW ND G +D + T G
Sbjct: 133 DTDGRNNTDG-RNDTDWRND-TDWRNDTDGRNDTDWRNDTDWRNDTDGRNDTDGRNDTDG 190
Query: 387 KREID 401
+ +ID
Sbjct: 191 RNDID 195
>SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 153 YGFRDNGAFFSLFGDNNGVGFD--FIGLVNNDGLRNDSSISSWLVHVHNDLNER 308
YG D+ + F+ D++GVG D ++G+V + +D+S+S + + ND N+R
Sbjct: 92 YGSDDDSSVFADDSDDDGVGDDSGYVGVVFGEDSDDDNSVS--VGNNDNDDNQR 143
>SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 249 RNDSSISSWLVHVHNDLNERSGLAWCDWSN-DNGGGHDWLSDS 374
R+ +S W+ H+HND+N G D S D H W S
Sbjct: 129 RSRHYLSQWMCHLHNDVNRYIGKEEFDCSKVDERWLHGWKDGS 171
>SB_7840| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 231
Score = 29.5 bits (63), Expect = 1.7
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 195 DNNGVGFDFIGLVNNDGLRNDSSIS--SWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLS 368
D+ GVG D IG V++DG D + S V +D N R S+D G G D
Sbjct: 104 DDGGVGDDAIGRVSDDGGVGDDGVGRVSDNGGVGDDANGRV-------SDDGGVGDDAEG 156
Query: 369 DSTTVGKREIDDFGCENGLGGVGD 440
+ G D G + GGVGD
Sbjct: 157 RVSDDGGVGDDGVGRVSDYGGVGD 180
>SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +3
Query: 195 DNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDS 374
DNNG G + N DG ND+ ++ + ++D + +G D NDN G + + +D
Sbjct: 92 DNNGAGSNDNDDNNGDG-SNDNDDNNGNGN-YDDNDNNNGACSNDNGNDNNGSYHYGNDD 149
Query: 375 TTVGKREIDDFGCENGLGGVGDSH 446
D NG G D +
Sbjct: 150 NNGAGSYEDGNDDNNGAGSYEDGN 173
Score = 27.1 bits (57), Expect = 9.3
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Frame = +3
Query: 195 DNNGVGFDFIGLVNNDGLR---NDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWL 365
DNNG G + NN ND + + +ND N +G + ++NG G +
Sbjct: 17 DNNGTGSNDNNDDNNGASSYDDNDDDNNGAGSNDNNDDNNGAGSSDGGDYDNNGAGSNDN 76
Query: 366 SDSTTVGKREIDDFGCENGLG-GVGDSHSYDSNESNEE 476
D+ G + D NG G D ++ D + N++
Sbjct: 77 DDNNGTGSYDDDGDDDNNGAGSNDNDDNNGDGSNDNDD 114
>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 198 NNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDST 377
NNG ++ NND N+ + + + +ND N+ +NDN +D +++
Sbjct: 323 NNGNNDNYNNYDNNDNNDNNDNYDN---NGNNDNNDNYD------NNDNYDNNDNYNNND 373
Query: 378 TVGKREIDDFGCENGLGGVGDSH-SYDSNESNE 473
+ +D NG G D++ +YD+N++N+
Sbjct: 374 NNDNNDNNDNYDNNGNNGNNDNYNNYDNNDNND 406
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 234 NNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGKREIDDFGC 413
NND N+ + ++ + +ND N+ +NDN +D +++ + +D
Sbjct: 266 NNDKNDNNDNNDNYNNNGNNDNNDNYD------NNDNYDNNDNYNNNDNNDNNDNNDNYD 319
Query: 414 ENGLGGVGDSH-SYDSNESNE 473
NG G D++ +YD+N++N+
Sbjct: 320 NNGNNGNNDNYNNYDNNDNND 340
>SB_20263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +3
Query: 195 DNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWS---NDNGGGHDWL 365
DNN ++ NND N+ + +++ + +ND N+ +G + + NDN +D
Sbjct: 86 DNNDNNDNYDNNGNND---NNDNYNNYDNNGNNDSNDNNGNNDNNDNYDNNDNYDNNDNY 142
Query: 366 SDSTTVGKREIDDFGCENGLGGVGDSH-SYDSNESNE 473
+++ + +D NG G D++ +YD+N++N+
Sbjct: 143 NNNDNNDNNDNNDNYDNNGNNGNNDNYNNYDNNDNND 179
>SB_59094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 306 RSGLAWCDWSN--DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNEEF 479
R G W D++ D ++ D GK+ +DD +NGL + Y++ N +
Sbjct: 263 RYGQPWGDYTGPQDTASLESYIHDQLGDGKKRLDDSRGDNGLWNQNGQNLYNNAIQNNGW 322
Query: 480 HF 485
F
Sbjct: 323 TF 324
>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
Length = 345
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 327 DWSNDNGGGHDWLSDSTTVGKREIDDF-GCENGLGGVGDSHSYDSNES 467
D SNDNG G D + + + DD+ EN + G DS + ++NES
Sbjct: 45 DESNDNGSG-----DDNLMSEDDADDYKDQENEMEGSEDSDTNNNNES 87
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 306 RSGLAWCDWSN--DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNEEF 479
R G W D++ D ++ D GK+ +DD +NGL + Y++ N +
Sbjct: 460 RYGQPWGDYTGPQDTASLESYIHDQLGDGKKRLDDSRGDNGLWNQNGQNLYNNAIQNNGW 519
Query: 480 HF 485
F
Sbjct: 520 TF 521
>SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 327 DWSNDNGGGHDWLSDSTTVGKREIDDF-GCENGLGGVGDSHSYDSNES 467
D SNDNG G D + + + DD+ EN + G DS + ++NES
Sbjct: 257 DESNDNGSG-----DDNLMSEDDADDYKDQENEMEGSEDSDTNNNNES 299
>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
Length = 576
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 240 DGLRNDS-SISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGKREIDDFGCE 416
DG+ ++ ++ S L H N + GLAWC G ++ +++ G + DD G +
Sbjct: 86 DGIVDEGLNMISNLSHTGNPIQLPYGLAWC------GKYYNMCDNASNSGDVDGDDSGDD 139
Query: 417 NGLGGVGDSHSYDSNESNE 473
+ +GD S DS + ++
Sbjct: 140 D--DDIGDIESNDSGDGDD 156
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 431 PTKPIFAPEIIDFPLPDGG 375
PTKP PE D PLP GG
Sbjct: 1472 PTKPQQEPEKRDLPLPTGG 1490
>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 393 EIDDFGCENGLGGVGDSHSYDSNESNEE 476
E+DD G ++G+GG D D + +E+
Sbjct: 252 EVDDAGGDDGVGGDNDDDRGDDGDDDED 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,690,314
Number of Sequences: 59808
Number of extensions: 242778
Number of successful extensions: 744
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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