Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f17r
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0306 + 2499350-2499678,2500041-2500137 31 0.89
01_02_0007 + 10132380-10133201 29 2.7
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.6
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 29 3.6
04_04_1413 - 33386049-33386339 29 3.6
11_06_0156 + 20748472-20748951 29 4.7
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 29 4.7
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 29 4.7
02_04_0166 - 20508656-20509092,20509282-20509372 29 4.7
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 4.7
01_01_0082 + 625198-625719 29 4.7
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 28 6.2
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061... 28 6.2
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 8.3
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882... 28 8.3
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.3
08_02_0588 + 19036509-19039235 28 8.3
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 28 8.3
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 28 8.3
>01_01_0306 + 2499350-2499678,2500041-2500137
Length = 141
Score = 31.1 bits (67), Expect = 0.89
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 47 TLAKPAGWPLWQP*ADPNDVIPI 115
TL + WP+WQP D N ++P+
Sbjct: 119 TLGELMDWPIWQPSQDLNSILPV 141
>01_02_0007 + 10132380-10133201
Length = 273
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +2
Query: 71 PLWQP*ADPNDVIPI---S*RLPPLPMVRGPPESPLQVLRPLEPST---QRVEAMITLFP 232
PL QP DPN+ P+ PP P+ + P SP Q L +P+T Q++ A I+ P
Sbjct: 187 PLPQP--DPNNPQPLPQPDPNAPPQPLPQPDPNSPPQPLPQPDPNTPPGQQINAKISSQP 244
Query: 233 N 235
+
Sbjct: 245 D 245
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 478 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 570
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 596 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAA 700
E + AP LPF S + + AR G APAL+A
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSA 36
>04_04_1413 - 33386049-33386339
Length = 96
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -3
Query: 201 CVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAG 58
C DGS GR +G GG G GG G G GC G +G
Sbjct: 50 CADGSGGRRRRTGGGGG----GGGGGGGCGGGGGGGGGGGCGGGGGSG 93
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 294 CWLPKQHRRSFRSRQPRPKY 353
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -3
Query: 699 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTAN 520
A N GA A V+ + +GR S+ +L + + AA WR+RR Q AL
Sbjct: 49 AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDALPPRP 104
Query: 519 IFS---GGTRVTTSNVQMHGSYNM 457
+ + GG+ TS + G M
Sbjct: 105 VAADGRGGSGEGTSRARGRGEEGM 128
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -3
Query: 225 NVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPA-GFAR 49
N + ST C GS ++ + + GGPLT GS R + G A G P G +
Sbjct: 369 NCLQRSTPCFLGSPKTASFAVNCGGPLTSGSDNLRYQSDEVNLGDASYYITGEPTWGVST 428
Query: 48 VTSF 37
V F
Sbjct: 429 VGRF 432
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 198 VDGSNGRSTCSGDSGGPLTIGSGGSR-QLIGITSFGSAQGCQRGHPA 61
V GS+ R + G SGG G GG+R Q+ + + G+A RG+ A
Sbjct: 31 VRGSHARRSKRGISGGAGCGGGGGARGQVTAVGASGAAAEDARGYDA 77
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 71 PLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRP 184
P + P A P + + + PP+P + PP P Q P
Sbjct: 322 PYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQYQTP 359
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +2
Query: 50 LAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPST 199
L P G P DV+P PP P V PP SP V P P+T
Sbjct: 40 LPSPCGTTCTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPPVAYP-PPTT 88
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = -3
Query: 660 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 481
VIA T + + S +NT S A C RR+ +A G A I G+ + S+
Sbjct: 160 VIAATYVDSMLGARSSTSNTESTAAVSCVPARRSMIE--IMAFGVAKILVRGSNMMKSDG 217
Query: 480 QMHGSYNMDTLHNDVA 433
G + L +VA
Sbjct: 218 AASGERKIGILAFEVA 233
>09_04_0130 -
14905044-14905505,14905865-14905933,14906000-14906104,
14906625-14906690,14907080-14907268,14907353-14907439,
14907597-14908118
Length = 499
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Frame = -3
Query: 204 LCVDGSNGRSTCSGDSGG-------PLTIGSGGS----RQLIGITSFGSAQGCQRG--HP 64
+ + G GRS G GG PLT+GSGGS + L+ + SA G G +
Sbjct: 125 MMLQGLGGRSPAGGGGGGGDGGLLLPLTLGSGGSGGDVQALLKAAAANSAGGGDAGGVYG 184
Query: 63 AGFA 52
GFA
Sbjct: 185 GGFA 188
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 627 CGASLLTNTRSVTAAHC 577
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>09_04_0660 -
19286653-19287271,19287791-19287916,19288016-19288221,
19288417-19288549,19288632-19288713,19288906-19289035,
19289187-19289279,19289391-19289510,19289594-19289660,
19290079-19290137,19290719-19290943
Length = 619
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 180 RSTCSGDSGGPL--TIGSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNF 31
RS SG GG + +G GGS L T+ R GF ++T+FN+
Sbjct: 525 RSRYSGAVGGTIHAVVGGGGSH-LSNFTAEAPPWSVYREMDYGFVKLTAFNY 575
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 548 SSPSLLAQLTSSPEAPGSPPP 486
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>08_02_0588 + 19036509-19039235
Length = 908
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 660 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQ 556
V+ + +GR S+ +L + + AA WR+RR Q
Sbjct: 185 VVVIVSGRRSVGEPTLDVSEMLLQAAQAWRSRRTQ 219
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 95 PNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEP 193
P +IP+ P P V PPE +Q++RP+ P
Sbjct: 517 PPVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMP 549
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 110 PIS*RLPPLPMVRGPP---ESPLQVLR-PLEPSTQRVEAMITLFPNVRAQTALVMTWRLT 277
P+ +L P+P+ + P S + VL P +P +++ I A M WRL
Sbjct: 96 PVMPKLNPVPLPKQPQFVHHSDMHVLHTPADPMHYQLDPCI-------ATEGSAMVWRLC 148
Query: 278 WRFCWLLAPEAAS 316
+ CW + EA +
Sbjct: 149 FECCWPWSSEATN 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,732,895
Number of Sequences: 37544
Number of extensions: 407119
Number of successful extensions: 2116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2111
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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