Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f16r
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 29 0.95
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.3
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 28 1.7
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 28 1.7
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 27 2.2
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|... 26 5.0
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 6.7
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch... 26 6.7
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 28.7 bits (61), Expect = 0.95
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 392 IGIFVLPTSSIALCY-GFDKSMFKSWISDEVAFTLIGCTSAFTVIISFNSFTTFHVKLWK 216
I IFVL A+CY + ++FK + DE + + C S + IS F +K K
Sbjct: 109 ISIFVLNVP--AVCYLTYKDALFKDYGKDEWVYFAVWCASCLMIFISLWYFYETWIKAVK 166
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/87 (27%), Positives = 38/87 (43%)
Frame = -3
Query: 548 DKSTHLNTLHGKFAIAALVFTTVSLINGLGSLWAFELRRYIPINVSKLIHIGIGIFVLPT 369
+KS LN L+ KF + T +++ + I I VS +I I + ++P
Sbjct: 517 NKSDDLNNLNEKFVLGDDA-TAEEIVDAETEKKQLDRSLRIGIFVSWIIFF-ILVIIVPL 574
Query: 368 SSIALCYGFDKSMFKSWISDEVAFTLI 288
Y F K F+ WI + +TLI
Sbjct: 575 PMYGSKYIFSKLFFRGWIIVIIIWTLI 601
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 587 SPASEESSAHVFCPLISGLRTNHCAETDSEWLQ 685
SP +++ + P G TN+ E ++EWLQ
Sbjct: 1583 SPLKAPTASQLIIPNFDGSITNYSGEEETEWLQ 1615
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 722 IVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAI 573
+VLC++GY+ + A + + WS LV R+ + + LA+
Sbjct: 264 LVLCLLGYEFFLVYAGYTTNESEKWSDLAHLVKNRKVYMYYENGSQLLAL 313
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 118 YYHLKRLNLMSESIEQQNHKFISNNSYELH*IEFTSNQF 2
+Y LKRL+ + E I H+ + SY+L FT F
Sbjct: 68 FYPLKRLSSIPEKIRANYHEELQTTSYDLVRNPFTHGLF 106
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 534 LEYLTREICYSCPRLYDC 481
+ + T E+C CP L+DC
Sbjct: 264 VRFWTSELCTQCPNLFDC 281
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -3
Query: 551 IDKSTHLNTLHGKFAIAALVFT--TVSLINGLG-SLWAFELRRYIPINVSKLIHIGIGIF 381
+++STHL +L K I ALVF+ L G S+ F+L ++ + +G+G
Sbjct: 221 LNESTHLYSLEAKANINALVFSPNRYWLCAATGSSIRIFDLETQEKVDELTVDFVGVGKK 280
Query: 380 VLPTSSIALCYGFD-KSMFKSW 318
I+L + D +++F W
Sbjct: 281 SSEPECISLTWSPDGQTLFSGW 302
>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 428 IPINVSKLIHIGIGIFVLPTSSI 360
+PIN+ + IG+G+ VLP +I
Sbjct: 149 LPINIQDNVWIGMGVIVLPGVTI 171
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 676 MASAINNWYPTTHSTICMVSHP 741
M +INN PT+HS+I V +P
Sbjct: 401 MPQSINNVEPTSHSSISKVVNP 422
>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 419 NVSKLIHIGIGIFVLPTSSIALCYGFD 339
N ++L +G+G V+P +AL Y FD
Sbjct: 179 NPTRLSMLGLGDIVMPGLMLALMYRFD 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,345
Number of Sequences: 5004
Number of extensions: 59953
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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