Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f16r
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0518 + 18091601-18091750,18093501-18093549,18094734-180949...    38   0.011
05_03_0510 + 14864430-14864792,14865234-14865485,14865573-148656...    34   0.14 
12_01_0718 + 6339982-6342981                                           29   3.0  
11_03_0079 + 9669666-9669728,9670779-9672545                           28   7.0  

>08_02_0518 +
           18091601-18091750,18093501-18093549,18094734-18094933,
           18095030-18095335
          Length = 234

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = -3

Query: 728 MHIVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAIVGSFI--K 555
           +H VL ++G  +L  EAIL+     G     KLV     H  LQ L   L+++G +   K
Sbjct: 51  VHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKLV-----HLALQFLAMLLSLIGLWTVWK 105

Query: 554 IIDKST--HLNTLHGKFAIAALVFTTVSLINGLGSLW 450
             D+    HL TLH    ++ ++F ++    G  + W
Sbjct: 106 FHDERQIDHLYTLHSWLGLSCIIFFSLQWATGFYTFW 142


>05_03_0510 +
           14864430-14864792,14865234-14865485,14865573-14865671,
           14865789-14866082,14866630-14867010
          Length = 462

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 588 LWIGYCWIFH*NYRQEHALEYLTREICYSCPRLYDCEFNQRPGIPVGI 445
           LW G C++F      EH L   T ++CY C +    E  + P    G+
Sbjct: 357 LWEGECFVFDKRVSVEHGLAQGTHKLCYGCKKPVSDEDMESPEWEYGV 404


>12_01_0718 + 6339982-6342981
          Length = 999

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/88 (26%), Positives = 43/88 (48%)
 Frame = -3

Query: 506 IAALVFTTVSLINGLGSLWAFELRRYIPINVSKLIHIGIGIFVLPTSSIALCYGFDKSMF 327
           + +L    VS +  LGS+ ++ +     +NV K  H G+   V P+S + L    D +++
Sbjct: 370 LKSLDLLEVSGLQLLGSIPSW-ISNLTSLNVLKFFHCGLSGPV-PSSIVYLTKLTDLALY 427

Query: 326 KSWISDEVAFTLIGCTSAFTVIISFNSF 243
               S E+A  +   T   T+++  N+F
Sbjct: 428 NCHFSGEIATLVSNLTQLETLLLHSNNF 455


>11_03_0079 + 9669666-9669728,9670779-9672545
          Length = 609

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 460 DPCGHLNCEDIFQSMYPN*FTLALASSCCRRHPL 359
           +PC HL    +  S  PN  T A   S C +H L
Sbjct: 303 EPCLHLFASMMLSSCKPNDITFATLFSVCTKHAL 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,587
Number of Sequences: 37544
Number of extensions: 367583
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)