Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f16r
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40760.1 68415.m05028 rhodanese-like domain-containing protei...    36   0.038
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr...    31   0.62 
At1g26100.1 68414.m03184 cytochrome B561 family protein contains...    30   1.9  
At5g62890.2 68418.m07892 permease, putative similar to permease ...    29   3.3  
At5g62890.1 68418.m07891 permease, putative similar to permease ...    29   3.3  
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ...    28   5.8  
At5g38630.1 68418.m04672 cytochrome B561 family protein contains...    28   7.7  

>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
           contains rhodanese-like domain PF00581
          Length = 474

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 588 LWIGYCWIFH*NYRQEHALEYLTREICYSCPRLYDCEFNQRPGIPVGI*TAKIYSNQ 418
           LW G C++F      EH L   T ++CY C +    E  + P    G+     YS +
Sbjct: 369 LWEGECFVFDKRVSVEHGLAQGTHKLCYGCKQPISDEDMEAPEYEYGVSCPYCYSKK 425


>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
           protein contains Pfam profiles: PF00954 S-locus
           glycoprotein family, PF00069 protein kinase domain,
           PF01453 lectin (probable mannose binding)
          Length = 849

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 633 ISGQKTCALDSSDAGLWIGYCWIFH*NYRQEHALEYLTREIC 508
           +SG++  +L SS+ G  IGY W  + + R E  ++   R  C
Sbjct: 725 VSGKRNTSLRSSEHGSLIGYAWYLYTHGRSEELVDPKIRVTC 766


>At1g26100.1 68414.m03184 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 236

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
 Frame = -3

Query: 731 TMHIVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAIVGSFIKI 552
           T+H +L V+G+ L+  EAIL    H     + K   K+  H  LQ +    A+ G + K 
Sbjct: 42  TLHPLLMVIGFILVSGEAILI---HRWLPGSRK--TKKAVHLWLQGMALASAVFGIWTKF 96

Query: 551 -IDKSTHLN--TLHGKFAIAALVFTTVSLINGLGSLW 450
              +    N  +LH    + ++       + G  S W
Sbjct: 97  HYQRGVFANFYSLHSWMGLLSVSLFAAQWVTGFMSFW 133


>At5g62890.2 68418.m07892 permease, putative similar to permease 1
           [Zea mays] GI:7844006; contains Pfam profile: PF00860
           Xanthine/uracil permeases family; identical to cDNA
           putative permease 1 (MQB2.21) GI:21326024
          Length = 532

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 503 AALVFTTVSLINGLGSLWAFELRRYIPINVSKLIH-IGIGIFVLPTSSIALC 351
           A +V +T+ +I G   LW   +R   PI+   L+  +G G++      +A C
Sbjct: 140 ALIVASTLQMILGFSGLWRNVVRFLSPISAVPLVGLVGFGLYEFGFPGVAKC 191


>At5g62890.1 68418.m07891 permease, putative similar to permease 1
           [Zea mays] GI:7844006; contains Pfam profile: PF00860
           Xanthine/uracil permeases family; identical to cDNA
           putative permease 1 (MQB2.21) GI:21326024
          Length = 476

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 503 AALVFTTVSLINGLGSLWAFELRRYIPINVSKLIH-IGIGIFVLPTSSIALC 351
           A +V +T+ +I G   LW   +R   PI+   L+  +G G++      +A C
Sbjct: 140 ALIVASTLQMILGFSGLWRNVVRFLSPISAVPLVGLVGFGLYEFGFPGVAKC 191


>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
           Arabidopsis thaliana mRNA for GATA transcription factor
           3, PID:e1254739
          Length = 295

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 753 NGTPWVRHHAYCTMRCGVP 697
           NGTPW  HH+   + C  P
Sbjct: 229 NGTPWAHHHSTQRVPCNYP 247


>At5g38630.1 68418.m04672 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 230

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
 Frame = -3

Query: 728 MHIVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAIVGSFIKI- 552
           +H V+ V+G  L   EA+L+     G + NL    K+  H  LQ     L+++G +  + 
Sbjct: 50  VHPVMMVIGLILFNGEAMLAYKSVQG-TKNL----KKLVHLTLQLTAFILSLIGVWAALK 104

Query: 551 --IDKS-THLNTLHGKFAIAALVFTTVSLINGLGSLW 450
             IDK   +  +LH    +A L         G  + W
Sbjct: 105 FHIDKGIENFYSLHSWLGLACLFLFAFQWAAGFVTYW 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,651
Number of Sequences: 28952
Number of extensions: 302456
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)