Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f16f
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.00 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   1.3  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   4.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.0  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.3  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   9.3  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    25   9.3  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 398  SPASEESSAHVFCPLISGLRTNHCAETDSEWLQ 300
            SP    +++ +  P   G  TN+  E ++EWLQ
Sbjct: 1583 SPLKAPTASQLIIPNFDGSITNYSGEEETEWLQ 1615


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 263 IVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAI 412
           +VLC++GY+  +  A  + +    WS    LV  R+ +   +     LA+
Sbjct: 264 LVLCLLGYEFFLVYAGYTTNESEKWSDLAHLVKNRKVYMYYENGSQLLAL 313


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 451 LEYLTREICYSCPRLYDC 504
           + + T E+C  CP L+DC
Sbjct: 264 VRFWTSELCTQCPNLFDC 281


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 557 IPINVSKLIHIGIGIFVLPTSSI 625
           +PIN+   + IG+G+ VLP  +I
Sbjct: 149 LPINIQDNVWIGMGVIVLPGVTI 171


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 55  CFSVSKQNVSEGFGKISFT 111
           CFS+SKQ +  G  K S T
Sbjct: 120 CFSISKQKIKNGKNKWSLT 138


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 309 MASAINNWYPTTHSTICNGVAPN 241
           M  +INN  PT+HS+I   V P+
Sbjct: 401 MPQSINNVEPTSHSSISKVVNPS 423


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 479 IAALVFTTVSLINGLGSLWAFELRRYIPINVSKLIHIGIGIFV 607
           IA  ++T+VS+   LG    F    ++P    KL++ GI  +V
Sbjct: 500 IALHIYTSVSIYEDLGQYGWFYGDFFLPSRSPKLVYQGIYRYV 542


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 303 SAINNWYPTTHSTICNGVAPNGV 235
           SAI+ WYP  H  +   +  +G+
Sbjct: 212 SAIDEWYPPGHGDVFEALTNSGI 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,625
Number of Sequences: 5004
Number of extensions: 59580
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)