Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f16f
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0518 + 18091601-18091750,18093501-18093549,18094734-180949...    38   0.009
05_03_0510 + 14864430-14864792,14865234-14865485,14865573-148656...    34   0.11 
12_02_0967 - 24916352-24916402,24916662-24916717,24917602-249176...    29   3.1  
11_03_0079 + 9669666-9669728,9670779-9672545                           28   5.5  
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673...    28   7.2  
11_06_0337 - 22454281-22456399,22458520-22459388                       27   9.6  

>08_02_0518 +
           18091601-18091750,18093501-18093549,18094734-18094933,
           18095030-18095335
          Length = 234

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +2

Query: 257 LHIVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAIVGSFI--K 430
           +H VL ++G  +L  EAIL+     G     KLV     H  LQ L   L+++G +   K
Sbjct: 51  VHPVLMLIGLVVLNGEAILAYKTVPGTKKLKKLV-----HLALQFLAMLLSLIGLWTVWK 105

Query: 431 IIDKST--HLNTLHGKFAIAALVFTTVSLINGLGSLW 535
             D+    HL TLH    ++ ++F ++    G  + W
Sbjct: 106 FHDERQIDHLYTLHSWLGLSCIIFFSLQWATGFYTFW 142


>05_03_0510 +
           14864430-14864792,14865234-14865485,14865573-14865671,
           14865789-14866082,14866630-14867010
          Length = 462

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 397 LWIGYCWIFH*NYRQEHALEYLTREICYSCPRLYDCEFNQRPGIPVGI 540
           LW G C++F      EH L   T ++CY C +    E  + P    G+
Sbjct: 357 LWEGECFVFDKRVSVEHGLAQGTHKLCYGCKKPVSDEDMESPEWEYGV 404


>12_02_0967 -
           24916352-24916402,24916662-24916717,24917602-24917685,
           24917751-24918251,24918520-24919207
          Length = 459

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 344 LRTNHCAETDSEWLQPLIIGTPQRIVQYAMVSHPMEFHYEMKISQKYPRQLLSVCELLD* 165
           L++  CA      LQ   +  P R   Y  V   +E  Y+ + + KYP + +   EL + 
Sbjct: 172 LQSTTCANDVPGILQRKFVSNPSRYKSYVYVGEYLEIFYQYRYT-KYPLRQMFYYELYEA 230

Query: 164 KY 159
            Y
Sbjct: 231 NY 232


>11_03_0079 + 9669666-9669728,9670779-9672545
          Length = 609

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 525 DPCGHLNCEDIFQSMYPN*FTLALASSCCRRHPL 626
           +PC HL    +  S  PN  T A   S C +H L
Sbjct: 303 EPCLHLFASMMLSSCKPNDITFATLFSVCTKHAL 336


>12_02_0360 -
           17966857-17966865,17966866-17966954,17967276-17967399,
           17967639-17967717,17968267-17968352,17968471-17968661,
           17970496-17970560,17971192-17971282,17971705-17971801,
           17971883-17972128,17972248-17972505
          Length = 444

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 251 TPLHIVLCVVGYQLLMAEAILSLSPHNGWSSNL 349
           +PL +  C++G+ +L A  I+    +N W  +L
Sbjct: 114 SPLTLCFCIIGHAMLCALLIVLFCAYNIWKEDL 146


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 480 IANFPCKVFKCVLLSIILMKDPTIANPEPSV*RIQ-CARLLSTN 352
           I   P K+ K   L ++ ++D  + N  PSV R+Q  A LL+ N
Sbjct: 630 IHKIPKKIGKLEYLEVLDIRDTNVTNLPPSVERLQRMAHLLAGN 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,696
Number of Sequences: 37544
Number of extensions: 371513
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)