Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f16f
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)                   30   1.8  
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)                    28   7.4  

>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
          Length = 813

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 454 EYLTREICYSCP-RLYDCEFNQRPGI 528
           EY+TR  CYSCP RL D   N++  I
Sbjct: 226 EYVTRRRCYSCPGRLCDSGVNEQYNI 251


>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
          Length = 1128

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 425 IKIIDKSTHLNTLHGKFAIAALVFTTVSLINGLGSL 532
           + ++D  T LN L  + ++ A   T VSLI G GSL
Sbjct: 784 VDVLDLLTSLNILKVQESVDATCMTKVSLIYGPGSL 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,153,781
Number of Sequences: 59808
Number of extensions: 447511
Number of successful extensions: 1048
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)