Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f16f
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 586 HWHWHL 603
           HWHWHL
Sbjct: 209 HWHWHL 214


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +2

Query: 119 TVHDDNYKIKIFHSTFNL 172
           T+H++NY  K++++  N+
Sbjct: 322 TIHNNNYNKKLYYNIINI 339


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 491 VFTTVSLINGLGSLWAF 541
           + + V L  GLG+LW F
Sbjct: 29  ILSVVGLAIGLGNLWRF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 491 VFTTVSLINGLGSLWAF 541
           + + V L  GLG+LW F
Sbjct: 82  ILSVVGLAIGLGNLWRF 98


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 56  VFLSQNKMSPKVSERSASPPLTVH 127
           +FL++N+++  ++E SA     VH
Sbjct: 90  IFLNENEINQLITECSAISDTNVH 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,751
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)