Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f16f
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40760.1 68415.m05028 rhodanese-like domain-containing protei...    36   0.030
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr...    31   0.49 
At1g26100.1 68414.m03184 cytochrome B561 family protein contains...    29   2.0  
At5g62890.2 68418.m07892 permease, putative similar to permease ...    29   2.6  
At5g62890.1 68418.m07891 permease, putative similar to permease ...    29   2.6  
At5g38630.1 68418.m04672 cytochrome B561 family protein contains...    28   6.1  
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    28   6.1  
At1g78620.2 68414.m09163 integral membrane family protein contai...    27   8.0  
At1g78620.1 68414.m09162 integral membrane family protein contai...    27   8.0  

>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
           contains rhodanese-like domain PF00581
          Length = 474

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 397 LWIGYCWIFH*NYRQEHALEYLTREICYSCPRLYDCEFNQRPGIPVGI*TAKIYSNQ 567
           LW G C++F      EH L   T ++CY C +    E  + P    G+     YS +
Sbjct: 369 LWEGECFVFDKRVSVEHGLAQGTHKLCYGCKQPISDEDMEAPEYEYGVSCPYCYSKK 425


>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
           protein contains Pfam profiles: PF00954 S-locus
           glycoprotein family, PF00069 protein kinase domain,
           PF01453 lectin (probable mannose binding)
          Length = 849

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 352 ISGQKTCALDSSDAGLWIGYCWIFH*NYRQEHALEYLTREIC 477
           +SG++  +L SS+ G  IGY W  + + R E  ++   R  C
Sbjct: 725 VSGKRNTSLRSSEHGSLIGYAWYLYTHGRSEELVDPKIRVTC 766


>At1g26100.1 68414.m03184 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 236

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = +2

Query: 242 LGATPLHIVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAIVGS 421
           L  + LH +L V+G+ L+  EAIL    H     + K   K+  H  LQ +    A+ G 
Sbjct: 38  LSYSTLHPLLMVIGFILVSGEAILI---HRWLPGSRK--TKKAVHLWLQGMALASAVFGI 92

Query: 422 FIKI-IDKSTHLN--TLHGKFAIAALVFTTVSLINGLGSLW 535
           + K    +    N  +LH    + ++       + G  S W
Sbjct: 93  WTKFHYQRGVFANFYSLHSWMGLLSVSLFAAQWVTGFMSFW 133


>At5g62890.2 68418.m07892 permease, putative similar to permease 1
           [Zea mays] GI:7844006; contains Pfam profile: PF00860
           Xanthine/uracil permeases family; identical to cDNA
           putative permease 1 (MQB2.21) GI:21326024
          Length = 532

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 482 AALVFTTVSLINGLGSLWAFELRRYIPINVSKLIH-IGIGIFVLPTSSIALC 634
           A +V +T+ +I G   LW   +R   PI+   L+  +G G++      +A C
Sbjct: 140 ALIVASTLQMILGFSGLWRNVVRFLSPISAVPLVGLVGFGLYEFGFPGVAKC 191


>At5g62890.1 68418.m07891 permease, putative similar to permease 1
           [Zea mays] GI:7844006; contains Pfam profile: PF00860
           Xanthine/uracil permeases family; identical to cDNA
           putative permease 1 (MQB2.21) GI:21326024
          Length = 476

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 482 AALVFTTVSLINGLGSLWAFELRRYIPINVSKLIH-IGIGIFVLPTSSIALC 634
           A +V +T+ +I G   LW   +R   PI+   L+  +G G++      +A C
Sbjct: 140 ALIVASTLQMILGFSGLWRNVVRFLSPISAVPLVGLVGFGLYEFGFPGVAKC 191


>At5g38630.1 68418.m04672 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 230

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
 Frame = +2

Query: 257 LHIVLCVVGYQLLMAEAILSLSPHNGWSSNLKLVDKRRAHWILQTLGSGLAIVGSFIKI- 433
           +H V+ V+G  L   EA+L+     G + NL    K+  H  LQ     L+++G +  + 
Sbjct: 50  VHPVMMVIGLILFNGEAMLAYKSVQG-TKNL----KKLVHLTLQLTAFILSLIGVWAALK 104

Query: 434 --IDKS-THLNTLHGKFAIAALVFTTVSLINGLGSLW 535
             IDK   +  +LH    +A L         G  + W
Sbjct: 105 FHIDKGIENFYSLHSWLGLACLFLFAFQWAAGFVTYW 141


>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/76 (22%), Positives = 30/76 (39%)
 Frame = -1

Query: 395 PASEESSAHVFCPLISGLRTNHCAETDSEWLQPLIIGTPQRIVQYAMVSHPMEFHYEMKI 216
           P    S  H++   I G R    A+  ++ L+ ++    QR++        +  +Y  K 
Sbjct: 381 PDRSPSDVHLYTTFIGGSRNQELAKASTDELKQVVTSDLQRLLGVEGEPVSVNHYYWRKA 440

Query: 215 SQKYPRQLLSVCELLD 168
              Y     SV E +D
Sbjct: 441 FPLYDSSYDSVMEAID 456


>At1g78620.2 68414.m09163 integral membrane family protein contains
           Pfam domain PF01940: Integral membrane protein
          Length = 342

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 28  FHLGFVSLFCFSVS---KQNVSEGFGKISFTA 114
           F LGFVS FC  VS      + + +GK ++ A
Sbjct: 207 FRLGFVSSFCTKVSDTVSSEIGKAYGKTTYLA 238


>At1g78620.1 68414.m09162 integral membrane family protein contains
           Pfam domain PF01940: Integral membrane protein
          Length = 333

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 28  FHLGFVSLFCFSVS---KQNVSEGFGKISFTA 114
           F LGFVS FC  VS      + + +GK ++ A
Sbjct: 198 FRLGFVSSFCTKVSDTVSSEIGKAYGKTTYLA 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,625,618
Number of Sequences: 28952
Number of extensions: 306357
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)