Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f14f
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.56 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   3.9  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.1  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 580 LSIIKYKIQSIVTYVLTNNMLCIIANNYSMHCDI 479
           +++  +KI  +V Y   N ++ +I   + M CD+
Sbjct: 205 ITMAHFKIIQVVPYCYINCLIYLIGGFWFMQCDV 238


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 595 QCEDTLSIIKYKIQSIVTYVLTNNMLC 515
           +CE+    +KY ++   T + T NMLC
Sbjct: 47  KCENQ-KCVKYLVEDEETSLATCNMLC 72


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 435 YLNPFY*SYR*NQKDFHNLNF 373
           + NP+Y  Y  N   +H L F
Sbjct: 37  WYNPYYYQYLQNAALYHKLQF 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,541
Number of Sequences: 336
Number of extensions: 2861
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)