Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f14f
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.2  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   4.2  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    25   7.4  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.8  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   9.8  

>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 109 FICHIKNS*ACCKNHF-NMLI*IV 177
           FI HI  S  CC+NHF N L+ ++
Sbjct: 15  FIIHIHFSHHCCENHFINPLVCLI 38


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 500 VICYNT*HIISKYISYNGLN 559
           +IC NT   ISKY +Y G++
Sbjct: 69  IICLNTHRTISKYEAYGGIH 88


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 616 EYCSNFDQCEDTLSI-IKYKIQSIVTYVLTNNMLCIIANNYSMHCDIFNDTGLKYIQN 446
           EY    D  E+ L+  ++   + +  YVL  N   ++ +  ++H  I N T  + +QN
Sbjct: 2   EYQRAIDSIEECLNKQLRLSSEKVDQYVLIENWTSLVGHLKTLHSLISNYTNGRELQN 59


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 VARIISIC*FKSLLKKVFKGFKSI*EID*RWR*C 241
           VAR+ S+C F + L ++ KG  S   ++  W  C
Sbjct: 474 VARLRSVCNFVAFLHQICKGVWSSCSLEKAWDEC 507


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 484 DIFNDTGLKYIQNNPTXXXXXXXXXXXKPEGFSQSKFHSINDSNLHRLNLVILKW 320
           +I  D  LK+++  P             P+G  +S   S  D+ L R N  ++K+
Sbjct: 5   EIIVDKILKFLEKQPKPEGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKF 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,220
Number of Sequences: 5004
Number of extensions: 42650
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)