Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f11r
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 1.8
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 1.8
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 5.5
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 27 5.5
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 27 5.5
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 27 5.5
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 27 5.5
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 27 5.5
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 27 5.5
Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 27 7.2
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z70307-14|CAA94338.2| 409|Caenorhabditis elegans Hypothetical p... 27 9.5
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 134 SPVQKLSTKRISLQCTDLGTLSLICPAVKHIC 39
S Q S+ + +CT +G++ L CP V +C
Sbjct: 415 SNCQTASSCTSNFECTSIGSMQLCCPTVASVC 446
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 176 GRELGHPYFPGSDGPDASTG 235
G E GHP PG DGP+ + G
Sbjct: 54 GGEPGHPGAPGQDGPEGAPG 73
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 176 GRELGHPYFPGSDGPDASTG 235
G E GHP PG DGP+ + G
Sbjct: 54 GGEPGHPGAPGQDGPEGAPG 73
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 176 GRELGHPYFPGSDGPDASTG 235
G E GHP PG DGP+ + G
Sbjct: 54 GGEPGHPGAPGQDGPEGAPG 73
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PAPDKADGRELGHPYFPGSDGPD 223
P D DG + G P PG+DGPD
Sbjct: 119 PGQDGEDGSD-GQPGAPGNDGPD 140
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PAPDKADGRELGHPYFPGSDGPD 223
P D DG + G P PG+DGPD
Sbjct: 120 PGSDGEDGAD-GQPGAPGNDGPD 141
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PAPDKADGRELGHPYFPGSDGPD 223
P D DG + G P PG+DGPD
Sbjct: 182 PGSDGEDGAD-GQPGAPGNDGPD 203
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PAPDKADGRELGHPYFPGSDGPD 223
P D DG + G P PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PAPDKADGRELGHPYFPGSDGPD 223
P D DG + G P PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PAPDKADGRELGHPYFPGSDGPD 223
P D DG + G P PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PAPDKADGRELGHPYFPGSDGPD 223
P D DG + G P PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141
>Z81143-1|CAB03513.1| 381|Caenorhabditis elegans Hypothetical
protein ZK265.2 protein.
Length = 381
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 188 GHPYFPGSDGPDASTGRRRVPHVDSLRAGC 277
G P PG DGP G P D+ C
Sbjct: 256 GQPGHPGPDGPSGDVGEVGAPGADAAYCPC 285
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +2
Query: 152 DPAPDKADGRE--LGHPYFPGSDGPDASTGRR 241
+P PD +G E G P PG DGP G R
Sbjct: 183 EPGPDGPEGDEGTPGLPGPPGEDGPVGQNGTR 214
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 95 QCTDLGTLSLICPAVKHIC 39
QCT +GTL CP IC
Sbjct: 263 QCTTMGTLQQCCPTYLFIC 281
>Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical
protein F49E11.5 protein.
Length = 212
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 338 CQTVCSASRAGVSHFISRHGDDRGQ 412
C+T+C S G ++ +SRH R Q
Sbjct: 16 CETLCEFSETGKNYILSRHNYLRSQ 40
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 188 GHPYFPGSDGPDASTGRRRVPHVDSLRAGCRSTS 289
GHP PG+ GP + G P D+ C S S
Sbjct: 248 GHPGQPGNAGPPGTPGAAGQPGGDAAYCPCPSRS 281
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 95 QCTDLGTLSLICPAVKHIC 39
QCT +G+ CP HIC
Sbjct: 318 QCTLIGSQQTCCPTASHIC 336
>Z70307-14|CAA94338.2| 409|Caenorhabditis elegans Hypothetical
protein C39E9.12 protein.
Length = 409
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 224 RQGRPSPGSRGVPVRDRPPCRGRGRFNFRHS 132
R G P PVR R P GR RF H+
Sbjct: 156 RPGMPIENRGITPVRQRAPSSGRDRFAMIHA 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,819,178
Number of Sequences: 27780
Number of extensions: 185494
Number of successful extensions: 811
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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