Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f10r
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.55 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 640 WKPKDSSKKPQRYNGGRALEDFIK 569
           WK  DSSKK  RY   R+++D I+
Sbjct: 229 WKKNDSSKKKTRYY-YRSVDDVIE 251



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 640 WKPKDSSKKPQRYNGGRALED--FIKYVSEQATSELK 536
           W P D S KP      R L D  F+ ++ +    +L+
Sbjct: 575 WHPSDKSAKPMLKPWQRVLPDGVFVAFLLKHIVPKLQ 611



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 74  QVEVYQYTTYDNTSDFYK 127
           ++E ++ T YD  ++FY+
Sbjct: 5   EMEKFEITDYDLNNEFYR 22


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 400 YFIVFHITFILHTNTHADL 456
           + IV  +  +L   THADL
Sbjct: 675 FHIVIGMNLVLQVGTHADL 693


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 353 ICFPLDRYNTHKLRSHISLFFTL 421
           ICF   RY+T  +   + +F  L
Sbjct: 303 ICFKAPRYHTLDITEPVKVFIQL 325


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,125
Number of Sequences: 336
Number of extensions: 3703
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)