Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f10r
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    42   1e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    35   0.009
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    30   0.26 
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    29   0.45 
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    28   1.4  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   1.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.2  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   3.2  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   5.5  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   5.5  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.7  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   9.7  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = -2

Query: 655 FPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSE 542
           FPTI + PKD   KP+ Y G R+LE  I+Y+++++ ++
Sbjct: 215 FPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQ 252



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 554
           GFPT+ W P D S +P +Y+  R ++   ++VSE+
Sbjct: 95  GFPTLIWFPPDGS-EPVQYSNARDVDSLTQFVSEK 128


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSE 542
           GFPTI +   +    P RY G R LED   ++ + A+ E
Sbjct: 426 GFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHASFE 464


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 658 GFPTI---FWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 536
           GFPTI   +   K SS     YNG R+ +   K+VS+   S++K
Sbjct: 104 GFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVK 147


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 315 ERRCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 431
           E R +C   + +F   FP   +  +N +V+ HC SH   P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 47  QLMXLIYHPQVE---VYQYTTYDNTSDFYKNV 133
           Q+M ++ HP +     Y YTT DN+ + Y N+
Sbjct: 75  QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 269 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 385
           +V +  N  N++    TT+S+   +   IC P+D+ NTH
Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 351 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMESF 470
           IS   +TD   INS +  F CF H + PS K T   +F+E F
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 312 LAIVMLHSLTIIFTDNRSRITLLDLQNNTDA*TQFHLSLLSVYGA 178
           LA++ LH L I++ D +    LLD + +    T F LS ++  GA
Sbjct: 201 LALIHLHKLGIVYRDLKPENCLLDAEGHI-LLTDFGLSKVAENGA 244


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 343 ILWVQRHRRSSCNSNVAFINHHIY 272
           I W  ++RRS C S ++F  + IY
Sbjct: 490 IAWDYKYRRSQCFSMLSFAKYAIY 513


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 640 WKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKG 518
           W+  D  + P++YN    LE + KY    AT+ L+G    G
Sbjct: 112 WQ-SDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLG 151


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 68  HPQVEVYQYTTYDNTSDFYKNVYYFLTKRSKMLSYICA 181
           H   + Y YTT+D+  D   +  +  T   + L +IC+
Sbjct: 520 HSIRKTYGYTTHDDLGDDGDDTAHLTTPHYEPLRFICS 557


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 589 ALEDFIKYVSEQATSELKGWDRKGNAKQGKEELXA 485
           AL+D  K  +E      KGW RKG A  G  +L A
Sbjct: 55  ALKDATK-CTELKPDWAKGWSRKGAALHGLGDLDA 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,738
Number of Sequences: 5004
Number of extensions: 60071
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)