Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f10r
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 40 0.002
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 38 0.005
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 33 0.15
03_02_0810 + 11429776-11429985,11430003-11430935 33 0.27
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 28 5.7
11_06_0121 - 20330511-20330707,20332250-20332343 28 7.6
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 28 7.6
05_05_0168 + 22875488-22876072 28 7.6
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = -2
Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 554
GFPT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 222 GFPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 255
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -2
Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 536
G+PTI W PK S +P++Y G R E +YV+ +A + +K
Sbjct: 103 GYPTIQWFPK-GSLEPKKYEGQRTAEALAEYVNSEAATNVK 142
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/35 (42%), Positives = 27/35 (77%)
Frame = -2
Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 554
G+PT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 193 GYPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 226
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -2
Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 536
G+PTI W PK S +P++Y G R+ E ++V+ + + +K
Sbjct: 74 GYPTIQWFPK-GSLEPKKYEGQRSAEALAEFVNTEGGTNVK 113
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 652 PTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEE 494
P + + P++ K + NG ++ + SE+A+S L + KG+ QGKEE
Sbjct: 313 PALLYLPRNG--KHVKINGNLVIKSIV--ASEKASSRLSNYGEKGSGNQGKEE 361
>03_02_0810 + 11429776-11429985,11430003-11430935
Length = 380
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 434 TQIHTQIFHGKF*ITTARXQLFLSLFGVTLSVPALKFACGLFRN 565
T ++T ++ K +TT ++ FG SVP + F CGLF N
Sbjct: 111 TCVYTYYYNDKS-VTTGLIEVDKFTFGAGASVPGVAFGCGLFNN 153
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 248 KVILDLLSVNMMVNECNITIARGTTM----SLYPKNAFHICF--PLDRY 376
K++ L SV M +CNIT+ GT S ++AF P DRY
Sbjct: 485 KLVKPLSSVKMASGDCNITVVEGTVHDEEDSCCLRDAFDFSIDDPFDRY 533
>11_06_0121 - 20330511-20330707,20332250-20332343
Length = 96
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 423 IHPSHKYTRR-SFMESFESQQHAXNSSFPCLALPFLSQPLSSLVACSETYLMKSSRARPP 599
+H ++TRR F+++ A +S +ALP+ + L++ + S T R++PP
Sbjct: 10 LHLFGQHTRRMEFIDNEMPSGTAMPTSVEGVALPWPHESLTTPIDTSNTASSLEPRSKPP 69
Query: 600 LYL*GFL 620
Y G L
Sbjct: 70 NYAMGVL 76
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 637 KPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWD-RKGNAKQGKEELXACCCDSKLS 461
KP+ + P GG A + ++++E A ++GW RK + + +++ S
Sbjct: 140 KPRITDVVPNGVQGGHAAAGWPRWLTEVAAEAVRGWQPRKAESFEKLDKIGQGTYSSVYK 199
Query: 460 MKDL 449
+DL
Sbjct: 200 ARDL 203
>05_05_0168 + 22875488-22876072
Length = 194
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALED 578
G P ++P+DSS P GG ++D
Sbjct: 95 GLPVTLYRPRDSSSPPAGKGGGGGVDD 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,098,987
Number of Sequences: 37544
Number of extensions: 339733
Number of successful extensions: 815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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