Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f10r
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 44   8e-05
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)                 36   0.029
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 34   0.089
SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)                      31   0.83 
SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)                   29   3.4  
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   7.7  
SB_43442| Best HMM Match : BNR (HMM E-Value=0.00033)                   28   7.7  

>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQG 503
           GFPTI++      K P +++GGR L+D IK+V E+AT  L     K  AK G
Sbjct: 596 GFPTIYFATSKDKKNPIKFDGGRELKDLIKFVEEKATVSLS----KEKAKDG 643


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 554
           GFPTI + PK S+  P+ YNGGR + DFIK++ E+
Sbjct: 95  GFPTIKYFPKGSTT-PEEYNGGRDINDFIKFIEEK 128


>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 1056

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 655  FPTIFWKPKDSSKKPQRYNGGR 590
            FPTI+W P ++ + P++Y GGR
Sbjct: 981  FPTIYWAPANNKENPEKYEGGR 1002


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -2

Query: 655 FPTIFWKPKDSSKKPQRYNGGRALEDFIKYV 563
           FPTI + PK+       YNGGR L+DF+K++
Sbjct: 457 FPTIKYFPKEGEAVD--YNGGRTLDDFVKFL 485


>SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)
          Length = 344

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 32  YKWTSQLMXLIYHPQVEVYQYTTYDNT-SDFYKNVYYFLTKRSKMLSYICAPYTESNER 205
           Y  T  +M L       VY       T +   +   Y LT +S+M+ + C P T  NER
Sbjct: 82  YTLTGNIMMLTKLIYTAVYTLIVKTRTRTRIIRTAVYILTGKSRMIKFRCVPVTYFNER 140


>SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -2

Query: 643 FWKPKDSSKKPQRYNGGRAL-EDFIKYVSEQA------TSELKGWDRKGNAKQGKEELXA 485
           FW+  +  +  +R + G  L +DF+K VSE+A       ++L+ W RK      K     
Sbjct: 51  FWEVNNYKRTVRRVDDGAKLCDDFMKMVSERAEIEALYAAKLQAWSRKWLDLLNKGPEYG 110

Query: 484 CCCDS 470
            C DS
Sbjct: 111 SCKDS 115


>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 658 GFPTI--FWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 536
           G+PTI  F     +S   + Y GGR   D I+Y  ++A   ++
Sbjct: 151 GYPTIKVFAAGIKNSHSVEDYQGGRTASDIIQYALDKAADSIE 193


>SB_43442| Best HMM Match : BNR (HMM E-Value=0.00033)
          Length = 510

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 38  WTSQLMXLIYHPQVEVYQYTTYDNTSDFYK 127
           +TS    +++   +E + YT +D  +DFYK
Sbjct: 190 YTSDADGIVFDKSLENHVYTNFDAATDFYK 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,754,456
Number of Sequences: 59808
Number of extensions: 436635
Number of successful extensions: 1152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)