Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f10r
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.85 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.0  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 86  YQYTTYDNTSDFYKNVYY 139
           Y+Y+ Y+N +++ K +YY
Sbjct: 89  YKYSNYNNYNNYNKKLYY 106


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 321 VVPLAIVMLHSLTIIFTDNRS 259
           V+P   +ML +LT+++ D+RS
Sbjct: 260 VIPAVTMMLLTLTVLWLDSRS 280


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 86  YQYTTYDNTSDFYKNVYYFLTKRSKMLSYI 175
           Y+Y+ Y+N +++  N Y    K+    +YI
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 406 IVFHITFILHTNTHADLSWKV-LNHNSTPTTLPF 504
           I+ ++ FILH     D+ W++  N    P  + F
Sbjct: 276 IIANLNFILHLFCLLDVQWRIPFNGIQMPNLMVF 309


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 20/86 (23%), Positives = 34/86 (39%)
 Frame = +2

Query: 362 PLDRYNTHKLRSHISLFFTLHSSFTQIHTQIFHGKF*ITTARXQLFLSLFGVTLSVPALK 541
           P    N  K R+   +F  LH  +  +H  I+ G   + T   +   S  G+T  + A+ 
Sbjct: 32  PEANVNLLKNRTGRYMFTYLHLLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLLGAIL 91

Query: 542 FACGLFRNILDEVL*STSSIISLRFL 619
               +    +  +     S +SLR L
Sbjct: 92  VQVAIICEGVMNIQKDNKSYLSLRSL 117


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 421 TFILHTNTHADLSW--KVLNHNSTPT 492
           T + H  TH +++W  + +  N+ PT
Sbjct: 172 TIVFHLETHPNVTWYSQCVTFNAFPT 197


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  YQYTTYDNTSDFYKNVY 136
           Y+Y+ Y+N ++ Y N Y
Sbjct: 89  YKYSNYNNYNNNYNNNY 105


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  YQYTTYDNTSDFYKNVY 136
           Y+Y+ Y+N ++ Y N Y
Sbjct: 89  YKYSNYNNYNNNYNNNY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,029
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)