Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f10r
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47470.2 68415.m05924 thioredoxin family protein similar to p...    39   0.003
At2g47470.1 68415.m05925 thioredoxin family protein similar to p...    39   0.003
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s...    31   0.68 
At1g54260.1 68414.m06186 histone H1/H5 family protein contains P...    30   1.6  
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s...    29   2.7  
At2g21680.1 68415.m02579 kelch repeat-containing F-box family pr...    29   3.6  
At1g13150.1 68414.m01525 cytochrome P450, putative strong simila...    28   6.3  

>At2g47470.2 68415.m05924 thioredoxin family protein similar to
           protein disulfide isomerase [Dictyostelium discoideum]
           GI:2627440; contains Pfam profile: PF00085 Thioredoxin
          Length = 266

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 551
           GFPT+ + PKD+ K    Y+GGR L+DF+ +++E++
Sbjct: 215 GFPTLKFFPKDN-KAGHDYDGGRDLDDFVSFINEKS 249



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 536
           G+PTI W PK  S +PQ+Y G R  E   +YV+++  + +K
Sbjct: 96  GYPTIQWFPK-GSLEPQKYEGPRNAEALAEYVNKEGGTNVK 135


>At2g47470.1 68415.m05925 thioredoxin family protein similar to
           protein disulfide isomerase [Dictyostelium discoideum]
           GI:2627440; contains Pfam profile: PF00085 Thioredoxin
          Length = 361

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 551
           GFPT+ + PKD+ K    Y+GGR L+DF+ +++E++
Sbjct: 215 GFPTLKFFPKDN-KAGHDYDGGRDLDDFVSFINEKS 249



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 536
           G+PTI W PK  S +PQ+Y G R  E   +YV+++  + +K
Sbjct: 96  GYPTIQWFPK-GSLEPQKYEGPRNAEALAEYVNKEGGTNVK 135


>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
           similar to SP|P29828 Protein disulfide isomerase
           precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
           contains non-consensus GA donor splice site at intron 9
          Length = 501

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEEL 491
           GFPTI++K   +S     Y G R  EDFI +V +   +  +    +   ++ K+EL
Sbjct: 448 GFPTIYFK--SASGNVVVYEGDRTKEDFISFVDKNKDTVGEPKKEEETTEEVKDEL 501


>At1g54260.1 68414.m06186 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 197

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 652 PTIFWKPKDSSKKPQRYNGGRALEDFIKYVSE 557
           PT+  +PKDS+K P+  N     +DF  ++SE
Sbjct: 77  PTLTLRPKDSTKPPELPNWYEEQQDFRMFLSE 108


>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
           similar to protein disulfide isomerase precursor
           GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
           PF00085 Thioredoxins
          Length = 508

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 658 GFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQA 551
           GFPTI+++   +S     Y G R  EDFI +V + +
Sbjct: 446 GFPTIYFR--SASGNVVVYEGDRTKEDFINFVEKNS 479


>At2g21680.1 68415.m02579 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 414

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 116 DFYKNVYYFLTKRSKMLSYICAPYTESNER*NCVYASVLFCKSSKV 253
           D  +N++ +  K SK  S+   P + S    +CV  ++LFC ++ V
Sbjct: 262 DLTRNIHIYDPKESKWESWTHGPLSASWNDSSCVVDNLLFCINTSV 307


>At1g13150.1 68414.m01525 cytochrome P450, putative strong
           similarity to gi|3313615 F21J9.9 from Arabidopsis
           thaliana and is a member of the PF|00067 Cytochrome P450
           family
          Length = 529

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 233 ITQMHKHSFISHCFQCTGH 177
           IT+MH   F+ H FQ T H
Sbjct: 139 ITEMHSTGFVEHSFQTTQH 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,350
Number of Sequences: 28952
Number of extensions: 299320
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)