Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f10f
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   5.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   5.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   5.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.2  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 156 EEDVLDLTDSDFSAXLSQHDT 218
           +  V  + + DF+  LSQ+DT
Sbjct: 71  DNSVTPMVNHDFTQHLSQYDT 91


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 379 CPDILH*KYSEKESFLPSTM 438
           CP+  +  Y+++  ++PSTM
Sbjct: 606 CPEGFNEFYNQRRRWMPSTM 625


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 379 CPDILH*KYSEKESFLPSTM 438
           CP+  +  Y+++  ++PSTM
Sbjct: 839 CPEGFNEFYNQRRRWMPSTM 858


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 379 CPDILH*KYSEKESFLPSTM 438
           CP+  +  Y+++  ++PSTM
Sbjct: 839 CPEGFNEFYNQRRRWMPSTM 858


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 156 EEDVLDLTDSDFSAXLSQHDT 218
           +  V  + + DF+  LSQ+DT
Sbjct: 71  DNSVTPMVNHDFTQHLSQYDT 91


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 156 EEDVLDLTDSDFSAXLSQHDT 218
           +  V  + + DF+  LSQ+DT
Sbjct: 71  DNSVTPMVNHDFTQHLSQYDT 91


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 426  SEYNGPRESNGIVKYMRAQVGPSSKE 503
            + +  P E NGIV+Y      P S +
Sbjct: 1219 ASWKPPVEPNGIVEYYTVYYKPVSTD 1244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,948
Number of Sequences: 336
Number of extensions: 2447
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)