Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f10f
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.66 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 497 GAGSNLGTHVLDNAIRLPWSIVLGRKLS 414
           G G  L +H++   + +P S+++G  L+
Sbjct: 128 GGGIELISHIISKQLHIPVSVLMGANLA 155


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 387 YPTLKIFRKGELSSEYNGPRESNGIVKY 470
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 297 LKTDVPPVALAK 332
           LK+D+PPVA  K
Sbjct: 249 LKSDIPPVAYVK 260


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 327 LAPPEGHRSLTGRRLPHTLA 268
           +APP GH + +   L  TLA
Sbjct: 513 VAPPSGHHASSAPLLAATLA 532


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 312 GHRSLTGRRLPHTLALVSYNDRTK 241
           GHR   GRR  +   L  YN   K
Sbjct: 47  GHREGLGRRHRYNFQLKPYNPEHK 70


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 312 GHRSLTGRRLPHTLALVSYNDRTK 241
           GHR   GRR  +   L  YN   K
Sbjct: 48  GHREGLGRRHRYNFQLKPYNPEHK 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,321
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)