Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f09f
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 30 1.1
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog... 29 2.5
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 29 3.3
U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical p... 28 4.4
AF068721-9|AAC19265.1| 570|Caenorhabditis elegans Hypothetical ... 28 4.4
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 5.9
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 5.9
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/112 (23%), Positives = 44/112 (39%)
Frame = -3
Query: 536 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 357
T P V P+S + + SA + + K +K +S SA P+ T
Sbjct: 768 TVPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINT 827
Query: 356 LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 201
+ S +P K + L+ + T + + + S P GL++PA P
Sbjct: 828 SSHPMVR-SPLPKMSVLEKPKPLRITRPTVIPQSPTVTSSARPSGLRQPAKP 878
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -3
Query: 536 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 357
++P+V LT SAR + AS +P +++R S + P T
Sbjct: 153 STPVVRNILQQLTTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQVT 212
Query: 356 LGTARTKLSRVP 321
GT+ SR+P
Sbjct: 213 PGTSSNHRSRLP 224
>Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical
protein F10B5.4 protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 217 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 321
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog
protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 217 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 321
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = -3
Query: 485 ARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LTR 306
A + E +S + ++ EAK + K + PSA +D + T T +++ P T+
Sbjct: 689 AEKPEGSSSGSATEKSKEIEAKSKKDDTKKPLEPSAASSDPSSSSTTTTTITKEPP--TQ 746
Query: 305 RKCRELKSSALTSVTRPEKLMMSDAPGG 222
++A + +P + + A G
Sbjct: 747 SASASGAAAAAAASAQPSESSSATAASG 774
>U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical
protein ZK1290.10 protein.
Length = 412
Score = 28.3 bits (60), Expect = 4.4
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = -3
Query: 548 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASP-----PEAKDLRTRLKMRIS 387
RLD T P+ A P+ L ++ ++ +E + AS T+ A P P A + +
Sbjct: 59 RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLE 118
Query: 386 PSAEPTDAETLGTARTKLSRVPT 318
P T ++ + T L R PT
Sbjct: 119 PPQPSTPQASISSTTTVLIRNPT 141
>AF068721-9|AAC19265.1| 570|Caenorhabditis elegans Hypothetical
protein ZK1055.7 protein.
Length = 570
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 431 PEAKDLRTRLKMRISPSAEPTDAETLGT 348
P + D + R+K+ +SP+A P DAE GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
R13G10.1 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 58 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 201
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 58 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 201
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,347
Number of Sequences: 27780
Number of extensions: 229807
Number of successful extensions: 693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -