Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f08f
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.0
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 2.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 3.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.5
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 3.5
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 4.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.2
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 8.1
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 8.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 572 AEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGKTTPVHNNNVAVG 405
+ ++ STPI++S+ + +S + S GS+ KT +N+ G
Sbjct: 157 SSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTISG 212
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 344 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 237
A+ + E +++VVRV R D + +N + + TSG
Sbjct: 64 ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 439 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 558
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 132 SKRIGLHLPHSDCCLQGSW 76
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 228 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 401
W+FT ++N QV NG + S +N + PL +G S+G+ + + LL
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481
Query: 402 VSDC 413
+ C
Sbjct: 482 RTQC 485
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 96 SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 206
S Y +G+S V + G+GV H+V + E + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 285 NSIRNSNYNGNLPLFVIVHGWNSNGN 362
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 194 PYVKERCKQPIL---AFHQT*PKQPSSYYKWQCQLYPELELQWKPASLCYCPRLEQQ 355
P+ +E ++P+L A + QP+S +LYP PAS P L Q
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQ 273
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 156 HLVDLEEPAEEDILMSRNGANN 221
+LVD++EPAEE I + ++ N+
Sbjct: 52 NLVDVQEPAEETIPLEQDKEND 73
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 248 PKQPSSYYKWQCQLYPELELQWKPASLCYCPRL 346
PK P +Y+W + +PE W + YC L
Sbjct: 2185 PKFPPVFYEWFVESFPEPN-NWVTSRQNYCRTL 2216
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 409 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 558
+AT WT + T+ + + SS A+ WS SS + + +T
Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASAT 971
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,709
Number of Sequences: 5004
Number of extensions: 56358
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -