Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f06r
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 28 1.3
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 28 1.7
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 2.2
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 2.2
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 2.9
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 26 6.7
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 6.7
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 6.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.7
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 8.8
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 8.8
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 8.8
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 8.8
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 553 WRFSPHCLQKHHPPSLRVQYHQE--RLGYSH 467
W + HCL K P+L V H+E +GYS+
Sbjct: 151 WDVTRHCLGKFKVPNLYVPRHEEWRMMGYSY 181
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 105 VRKGSPTTRCRLGDRCRSEPMRCHCHHCKY 194
V+ G+ TR ++GDR + M C +C+Y
Sbjct: 76 VKVGAGVTRLKIGDRVGVKWMNSSCGNCEY 105
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 643 HRCSLHCCCIHTW--KSLWKSSSDSRHKPMELWRFSPHCLQKHH 518
H+C HC C H + + + + HKP W+ HC HH
Sbjct: 167 HKCKEHCSCHHDKFPRPVPHNGTKPDHKP---WKHEEHC---HH 204
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 703 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTWKS 599
W L LCLR + HR LG H + + W +
Sbjct: 36 WNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSN 70
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 519 THPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 409
T Y+S+ I G+L++SS I N V ++LSF+
Sbjct: 852 TFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFN 888
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -3
Query: 705 NGIF--IRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWN-SGGSLHT 535
NG F + F G T+ VL + A + S+S + + W+ G SLH
Sbjct: 63 NGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASISRSKAKDEKPHVWHHEGKSLHP 122
Query: 534 VSRNITHPHYVS 499
+ +HPH V+
Sbjct: 123 ERQTSSHPHQVT 134
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 6.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 709 HCYHMGVAALSC 744
HCYH G+ AL C
Sbjct: 165 HCYHHGITALLC 176
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 381 VAGWGRVRANGALSTNLLEINVRTIDGQT 295
++GW V A + +LL + V TI+G+T
Sbjct: 208 LSGWNPVPAEFVIQGHLLYLTVLTIEGKT 236
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 703 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTW 605
W L +C+R HR+LG H + + +W
Sbjct: 42 WNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 547 TSRVPLVCADCQTKISRETSKCEYSNNAMSSGEHRACGEH 666
TS A +T +SR SK E + SS + GEH
Sbjct: 1268 TSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEH 1307
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 8.8
Identities = 24/75 (32%), Positives = 32/75 (42%)
Frame = -3
Query: 543 LHTVSRNITHPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFDYVPGGVPVRVAGWGR 364
LH V R + ++ IL S + VFNN+V S F + V V R
Sbjct: 435 LHDVIRTYQAKKLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQ--KDNLLVIVHESPR 492
Query: 363 VRANGALSTNLLEIN 319
V NG TN+L +N
Sbjct: 493 VLGNGTSETNVLNLN 507
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 165 MRCHCHHCKYQFLLRGMCRARYEVR 239
++C CH Y++ R M R+ E R
Sbjct: 425 VKCTCHDATYEYTRRKMIRSLIEFR 449
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = -2
Query: 694 HQELCLRRLSAHRTLGAHRCSLHCCCIHTWKSLWKSSSDSRHKPMELWRFSP 539
H E+ + +T+ S+ CI +K W S H+P +L+ P
Sbjct: 88 HVEVIDYNIECKKTVALSMDSITKTCILNYKLEWTYSGVLLHRPWKLFSLKP 139
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 241 CRTSYRALHIPRRRNWYLQW*QWQRIGSDRQRSP 140
CR I + NW L QWQ I SDRQ P
Sbjct: 130 CRQPCARASIAKDMNWDLT--QWQPIISDRQFLP 161
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 584 RRFPERLPSVNTATMQ*AAVSTERAVSTEPPQTK 685
R F +++ N ++ A+S E A STEPP +
Sbjct: 240 REFFQKIGFKNDNQLENKAISEEEANSTEPPNVE 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,794
Number of Sequences: 5004
Number of extensions: 62040
Number of successful extensions: 212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -