Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f06f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   0.92 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.6  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   1.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    27   2.1  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   2.1  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    26   4.9  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   4.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.9  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   6.5  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   6.5  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   8.6  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    25   8.6  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 349 WRFSPHCLQKHHPPSLRVQYHQE--RLGYSH 435
           W  + HCL K   P+L V  H+E   +GYS+
Sbjct: 151 WDVTRHCLGKFKVPNLYVPRHEEWRMMGYSY 181


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 107 WTCHLQAWGGPRQPQRAPQKVFRI 36
           WT HL +WG P   +   QKV  +
Sbjct: 22  WTIHLGSWGNPMPNRACVQKVLPV 45


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 259 HRCSLHCCCIHTW--KSLWKSSSDSRHKPMELWRFSPHCLQKHH 384
           H+C  HC C H    + +  + +   HKP   W+   HC   HH
Sbjct: 167 HKCKEHCSCHHDKFPRPVPHNGTKPDHKP---WKHEEHC---HH 204


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 199 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTWKS 303
           W L   LCLR  + HR LG H   +    +  W +
Sbjct: 36  WNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSN 70


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 383 THPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 493
           T   Y+S+ I    G+L++SS I   N V  ++LSF+
Sbjct: 852 TFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFN 888


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +2

Query: 197 NGIF--IRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWN-SGGSLHT 367
           NG F  +  F   G   T+  VL     + A +   S+S +       + W+  G SLH 
Sbjct: 63  NGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASISRSKAKDEKPHVWHHEGKSLHP 122

Query: 368 VSRNITHPHYVS 403
             +  +HPH V+
Sbjct: 123 ERQTSSHPHQVT 134


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 76  PGSRKERHKKYSVFYVHFSRRPN 8
           P    ER + +S+F++HFS++ N
Sbjct: 41  PDRVHERREDWSLFFIHFSKKSN 63


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 193 HCYHMGVAALSC 158
           HCYH G+ AL C
Sbjct: 165 HCYHHGITALLC 176


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 199 WYLHQELCLRRLSAHRTLGAHRCSLHCCCIHTW 297
           W L   +C+R    HR+LG H   +    + +W
Sbjct: 42  WNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 355  TSRVPLVCADCQTKISRETSKCEYSNNAMSSGEHRACGEH 236
            TS      A  +T +SR  SK E    + SS +    GEH
Sbjct: 1268 TSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEH 1307


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = +2

Query: 359 LHTVSRNITHPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFDYVPGGVPVRVAGWGR 538
           LH V R         +    ++ IL  S + VFNN+V   S  F      + V V    R
Sbjct: 435 LHDVIRTYQAKKLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQ--KDNLLVIVHESPR 492

Query: 539 VRANGALSTNLLEIN 583
           V  NG   TN+L +N
Sbjct: 493 VLGNGTSETNVLNLN 507


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 208 HQELCLRRLSAHRTLGAHRCSLHCCCIHTWKSLWKSSSDSRHKPMELWRFSP 363
           H E+    +   +T+     S+   CI  +K  W  S    H+P +L+   P
Sbjct: 88  HVEVIDYNIECKKTVALSMDSITKTCILNYKLEWTYSGVLLHRPWKLFSLKP 139


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 318 RRFPERLPSVNTATMQ*AAVSTERAVSTEPPQTK 217
           R F +++   N   ++  A+S E A STEPP  +
Sbjct: 240 REFFQKIGFKNDNQLENKAISEEEANSTEPPNVE 273


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 175  VAALSCLATPHNTSVPVHMLVEDGHVIFRLGEGP 74
            V  L      H+T    H LV DG V+ R+ +GP
Sbjct: 934  VEELEAAKKDHDTPSGSHALVIDGSVLKRVLDGP 967


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 167 PELPGY--PPQYERSG--PHARRRWTCHLQAWGGPRQPQR 60
           P++PG   P   +R+G  P A +R     Q  GGP  PQR
Sbjct: 720 PQMPGMQQPMAPQRTGMQPMAPQRTGMQPQMTGGPMLPQR 759


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 284 VFTLGSLSGNLRLTVGTNQWNSGGSLHTVSRNIT 385
           VF  GS    L    GTN WN    L +++ N T
Sbjct: 172 VFYRGSEGIELAACTGTNVWNYSNVLTSINENGT 205


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 176 PHMVAMTNGIFIRSFVC-GGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWN 346
           P +  +  G  I  F+  GG+V+  +  L A+ CI+ + + G +S         N+WN
Sbjct: 181 PVICGLIVGCLIGYFIYRGGNVMNLQWFLIASTCILYLISAGLMS-KATFYFEMNKWN 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,172
Number of Sequences: 5004
Number of extensions: 52611
Number of successful extensions: 172
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)