Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f05r
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866...    29   2.8  
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     29   3.8  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    29   5.0  

>09_04_0745 +
           19884868-19886000,19886110-19886309,19886422-19886666,
           19886880-19887668
          Length = 788

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 309 PNSYFQERYHWSRFFPNRWQSDGNRR 386
           P S+  +  H  R +P RW+S G+RR
Sbjct: 14  PVSWCHQDRHGRRHYPRRWRSSGSRR 39


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 270 FLSRTRWSHLEGRPNSYFQERYHWSRFFPNRWQSDGNRRSC 392
           F+  TR   LEG  ++YF E  + S   P   Q DG  +SC
Sbjct: 448 FIPETRGIPLEGVGSAYFNELINRSMIQPADVQYDGTVQSC 488


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 270 FLSRTRWSHLEGRPNSYFQERYHWSRFFPNRWQSDGNRRSC 392
           F+ R R S+LE   + YF E    +   P R  S G  RSC
Sbjct: 534 FIGRVRGSNLEEIADKYFDEFISRNIVTPIRIDSSGEVRSC 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,298,065
Number of Sequences: 37544
Number of extensions: 419906
Number of successful extensions: 1007
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)