Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f05r
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67240.1 68418.m08475 exonuclease family protein contains exo...    29   4.1  
At4g01580.1 68417.m00206 transcriptional factor B3 family protei...    27   9.6  

>At5g67240.1 68418.m08475 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 745

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 117 VSSTGCHTDYPAGFIRPGHYHDWYLEVTG 31
           V  T  H DYP  +  P +  DWY+   G
Sbjct: 105 VRLTITHDDYPGNYTFPSYAEDWYVTELG 133


>At4g01580.1 68417.m00206 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 190

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 114 SSTGCHTDYPAGFIRPGHYHDWYLEVTGIDFDLETRN 4
           +++ C T+YP   +      D  +E+TG +FD E ++
Sbjct: 120 NASACETNYPLDAVHIIDSDDDVIEITGKEFDTEHKS 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,228
Number of Sequences: 28952
Number of extensions: 319199
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)