Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f05f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    27   2.8  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   8.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 121 ILAPALTFSTKVRAGSADTTATPAIATRS 35
           + +PA  +S     GS DTTA P+I  RS
Sbjct: 310 VSSPATQYSASDYLGSNDTTARPSIFGRS 338


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 261 ATRVTIVIRAGTVNMTRPAVVFETTDYLNHPLYDESIQ 374
           A  V  V RAGT  +  P  +  T++ + +P Y + I+
Sbjct: 289 APEVAWVTRAGTSELDEPIAIRPTSETVMYPYYAKWIR 326


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 518 GKNLDQWYRS*KYELGLP 571
           G ++ QWYR+  + LGLP
Sbjct: 404 GVDMHQWYRAGYFPLGLP 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,164
Number of Sequences: 5004
Number of extensions: 44992
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)