Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f03r
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 234 5e-62
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 230 6e-61
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 37 0.016
At4g40020.1 68417.m05666 hypothetical protein 33 0.15
At1g03080.1 68414.m00282 kinase interacting family protein simil... 33 0.15
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ... 32 0.35
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 31 0.82
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 31 0.82
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 31 0.82
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.82
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 31 1.1
At4g33690.1 68417.m04785 expressed protein 30 1.4
At1g14480.1 68414.m01717 ankyrin repeat family protein contains ... 30 1.9
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 29 3.3
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 29 3.3
At5g22080.1 68418.m02571 DNAJ heat shock N-terminal domain-conta... 29 4.4
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 28 5.8
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 5.8
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 7.6
At3g58330.1 68416.m06502 hypothetical protein 28 7.6
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 234 bits (572), Expect = 5e-62
Identities = 113/236 (47%), Positives = 157/236 (66%)
Frame = -2
Query: 750 RLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXX 571
R +VR +NKD+ Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 50 RFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRV 109
Query: 570 XXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDG 391
++++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DG
Sbjct: 110 LKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDG 168
Query: 390 GLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKL 211
GL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+ + + FS YIK
Sbjct: 169 GLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKK 228
Query: 210 GVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 43
GV A++IE +YKK H AIRA+P+HKK E K + KR+N +KLT ERKN++ ++
Sbjct: 229 GVEAESIEEMYKKVHAAIRAEPNHKKTE-KSAPKEHKRYNLKKLTYEERKNKLIER 283
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 230 bits (563), Expect = 6e-61
Identities = 112/236 (47%), Positives = 156/236 (66%)
Frame = -2
Query: 750 RLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXX 571
R +VR +NKD+ Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 50 RFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRV 109
Query: 570 XXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDG 391
++++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DG
Sbjct: 110 LKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDG 168
Query: 390 GLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKL 211
GL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+ + + FS YIK
Sbjct: 169 GLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKK 228
Query: 210 GVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 43
GV A++IE +YKK H AIRADP + KK +K + KR+N +KLT ERKN++ ++
Sbjct: 229 GVEAESIEELYKKVHAAIRADP-NPKKTVKPAPKQHKRYNLKKLTYEERKNKLIER 283
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -2
Query: 318 VHRAHIFGLHVAE-YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPS 142
+H +++ G+H Y ++ E+ S + ++KL + EA K+ E R D
Sbjct: 87 IHMSYLAGIHFNSIYKKNKEKGSRSSSSSSSAVWMKLQRKKEN-EAKKKEEEEKERKDME 145
Query: 141 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 40
++K+ K+ K+ + +K+K + + K K+KK
Sbjct: 146 KEEKKKDKEDKKKDKEDKKKAKVQKEKKEKKEKK 179
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 33.5 bits (73), Expect = 0.15
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = -2
Query: 348 DAESKKFNAEVHRAHIFGLH--VAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYK 175
+ E K N V +I L ++E ++E++ + S RQ S + + +E + K
Sbjct: 343 EIERVKVNEAVANDNIKKLKKMLSEIEVAMEEEKQRSLNRQES------MPKEVVEVVEK 396
Query: 174 KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 19
K E + + + K+ KK+S K+K+ + K E K + +Q +F KR+
Sbjct: 397 KIEEKEKKEEKKENKKEKKESKKEKKEHSEK---KEDKEKKEQTHQNFDKRM 445
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 33.5 bits (73), Expect = 0.15
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = -2
Query: 336 KKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK-RQFSKYIKLGVTA--DAIEAIYKKAH 166
KK + V + + GLH + S+++ E++ K ++ + + TA + +E + K
Sbjct: 612 KKHQSMVEQVELVGLHPESFGSSVKELQEENSKLKEIRERESIEKTALIEKLEMMEKLVQ 671
Query: 165 EAIRADPSHKKKELKKDSV--KQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAE 4
+ + + S + +++ K K + ++LAE K+ + +K I RLQ+ E
Sbjct: 672 KNLLLENSISDLNAELETIRGKLKTLEEASMSLAEEKSGLHSEKDMLISRLQSATE 727
>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 816
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -2
Query: 180 YKKAHEAIRADPSHKKKELKKDSVKQKRWNK-RKLTLAERKNRIKQKKASFIK 25
+++A + D K K+L + KRWN R+LTLA + ++++ ++F+K
Sbjct: 60 HRQAQIGMLFDTLEKGKKLTDKVLSSKRWNLYRQLTLARKMEKLEKTISNFLK 112
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = -2
Query: 192 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 13
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 264 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVRY 322
Query: 12 QA 7
Q+
Sbjct: 323 QS 324
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = -2
Query: 192 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 13
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 381 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVRY 439
Query: 12 QA 7
Q+
Sbjct: 440 QS 441
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = -2
Query: 192 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 13
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 96 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVRY 154
Query: 12 QA 7
Q+
Sbjct: 155 QS 156
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = -2
Query: 258 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKL 79
++ ++ + + G+ + I ++ +KA E R K ++ K+ K+KR +K K
Sbjct: 765 EESQEYRSIGDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKE 824
Query: 78 TLAERKNRIKQKKASFIKRLQAQAE 4
+ + R K+K KR ++ E
Sbjct: 825 RREKEREREKEKGKERSKREESDGE 849
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 156 RADPSHKKKELKK-DSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 22
R DP KK+ K+ DS +KR + T A +K R+KQ SF+K+
Sbjct: 468 RVDPRFMKKKTKEVDSNVKKRETLPEKT-ARKKKRLKQINMSFVKK 512
>At4g33690.1 68417.m04785 expressed protein
Length = 281
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 189 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 82
E +YK+AH R HKKK KK K+K+ +++K
Sbjct: 243 EEVYKRAH---RKRKEHKKKLSKKHKSKEKKRDRKK 275
>At1g14480.1 68414.m01717 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 412
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 ASA*ACSLLMKEAFFCLILFFLSANVSLRLFQRFCLTE--SFFNSFFLWDGSARMASWAF 175
A+A A S++MK+ FF L+ + +F FCL F +F + G+ S+A
Sbjct: 293 ANANAGSVVMKQTFFILLWISNTVGFCCAVFYTFCLIPLGQLFTIWFFYIGTCLCISYA- 351
Query: 176 L*MASIA 196
L MA I+
Sbjct: 352 LAMAVIS 358
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 172 SP*SHPCGSIPQEERVKERLCQTEALEQTQANI 74
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 172 SP*SHPCGSIPQEERVKERLCQTEALEQTQANI 74
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At5g22080.1 68418.m02571 DNAJ heat shock N-terminal
domain-containing protein similar to J-domain protein
Jiv [Bos taurus] GI:15777193; contains Pfam profile
PF00226 DnaJ domain
Length = 246
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -2
Query: 234 QFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNR 55
+F K +KL V + +++ A+R S ++ LKKD +QK K+K E+
Sbjct: 143 EFQKELKLKVREILTDQEWRRRKMAMRI--SEEEGRLKKDEAEQKEIWKKKREHEEQWEG 200
Query: 54 IKQKKAS 34
++K+ S
Sbjct: 201 TREKRVS 207
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -2
Query: 189 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERK--NRIKQKKASFIKR 22
E K+A+E+ + + KK E KK S ++ K + T ERK N +KKA ++
Sbjct: 747 EETQKEANESTKKERKRKKSESKKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEE 806
Query: 21 LQAQAEA 1
+ + E+
Sbjct: 807 EETRKES 813
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 138 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 40
K+KE KKD K+++ KR+ + K R+K++K
Sbjct: 1287 KEKEKKKDKEKKEKKRKREDPVYLEKKRLKKEK 1319
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = -2
Query: 270 SLEQDD-EDSFKRQFSKYIK--LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 100
S E DD ++S +R K K G+ + + K+ + + PS+KK+ K S +++
Sbjct: 821 SYEDDDHQNSLRRSKRKKHKKEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKE 880
Query: 99 RWNKRKLTLAERKNRIKQKKA 37
K + + R R + A
Sbjct: 881 SKRKSSKSKSSRPRRAAARNA 901
>At3g58330.1 68416.m06502 hypothetical protein
Length = 173
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = -2
Query: 156 RADPSHKKKELKKDS-VK----QKRWNKRKLTLAERKNRIKQKKASFIKRLQ 16
+ D ++ KKE ++ S V+ +++ NKRKLTL++ ++ +K++KA+ + Q
Sbjct: 116 KLDEAYLKKEKQRISGVRIRELEEQVNKRKLTLSDLESDLKKEKANQLSMAQ 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,264
Number of Sequences: 28952
Number of extensions: 309497
Number of successful extensions: 1108
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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