Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f03f
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 180 9e-46
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 177 5e-45
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 29 4.3
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 7.5
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 9.9
02_04_0381 - 22497519-22497769,22498157-22498247 27 9.9
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 180 bits (438), Expect = 9e-46
Identities = 101/198 (51%), Positives = 117/198 (59%)
Frame = +2
Query: 59 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQLKNILYD*ADG*KWNVGQLSVA 238
GFVK K YFKR+QVKFKRRR+GKTDY AR RL Q
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQ---------------------- 40
Query: 239 HWDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 418
DKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAA
Sbjct: 41 --DKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAA 95
Query: 419 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 598
AY TG +Y VEP D FR LDVGL RTTTG
Sbjct: 96 AYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGN 154
Query: 599 RVFGAMKGAVDGGLNVPH 652
RVFGA+KGA+DGGL++PH
Sbjct: 155 RVFGALKGALDGGLDIPH 172
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 177 bits (432), Expect = 5e-45
Identities = 100/198 (50%), Positives = 116/198 (58%)
Frame = +2
Query: 59 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQLKNILYD*ADG*KWNVGQLSVA 238
GFVK K Y KR+QVKFKRRR+GKTDY AR RL Q
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQ---------------------- 40
Query: 239 HWDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 418
DKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAA
Sbjct: 41 --DKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAA 95
Query: 419 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGA 598
AY TG +Y VEP D FR LDVGL RTTTG
Sbjct: 96 AYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGN 154
Query: 599 RVFGAMKGAVDGGLNVPH 652
RVFGA+KGA+DGGL++PH
Sbjct: 155 RVFGALKGALDGGLDIPH 172
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/94 (26%), Positives = 34/94 (36%)
Frame = -2
Query: 404 SDQPSHHNVATHVNKQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYICSCPSVLQTI 225
S P HN + VNKQ L + PPG + + + S V I
Sbjct: 163 SIHPKDHNHSAAVNKQAYDNDWLPQDEPPPGNQSALPETSGDQSLYESSLQSSTLVAGVI 222
Query: 224 VPHSTFTHQLNHREYFSTEQRGVYEHNNQFSLHD 123
PH N FS+E+ EH+ S +D
Sbjct: 223 NPHENSHLDENRSAAFSSERH--LEHHGGDSEYD 254
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 254 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 376
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 315 WHVTSLLERRTIRRYLGVLY 256
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 385 WCEGWSDKLCCSIFNWSAISTKTASK 462
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,529,629
Number of Sequences: 37544
Number of extensions: 350551
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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