Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10f03f
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 153 2e-37
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 54 1e-07
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 2.5
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 2.5
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 5.8
SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74) 28 5.8
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 5.8
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 153 bits (370), Expect = 2e-37
Identities = 69/112 (61%), Positives = 80/112 (71%)
Frame = +2
Query: 317 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 496
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 497 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 652
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/66 (46%), Positives = 37/66 (56%)
Frame = +2
Query: 119 RRREGKTDYYARKRLVVQLKNILYD*ADG*KWNVGQLSVAHWDKNKYNTPKYRLIVRLSN 298
RR +GKTDYYARKRL+ Q KN KYNTPKYR +VR++N
Sbjct: 17 RRSQGKTDYYARKRLITQDKN------------------------KYNTPKYRFVVRITN 52
Query: 299 KDVTCQ 316
KD+ CQ
Sbjct: 53 KDIICQ 58
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 642 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 529
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 642 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 529
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 74 VKNKQYFKRYQVKFKRRREGKTDYYARKR-LVVQLKNIL-YD*ADG 205
VK+K+ KR K KR+ + K+D + RK+ L+V + ++ +D DG
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLIVSVVELVTHDDDDG 273
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 278 LIVRLSNKDVTCQVAYSRIEGD-HIVC 355
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 142 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 35
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74)
Length = 730
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/90 (24%), Positives = 34/90 (37%)
Frame = -2
Query: 443 LIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*V 264
LI + L+ LS Q + H + + K+RT + + RP D DD+
Sbjct: 210 LIEVHKSALEDQLSHQDAEHEMRDEMPKRRTSF----LDKRPEAAAKS--DDDDDDDVDF 263
Query: 263 CYICSCPSVLQTIVPHSTFTHQLNHREYFS 174
I S P +PH + Y+S
Sbjct: 264 VKIMSTPGQADPFIPHERILSKYAAMMYYS 293
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 326 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 424
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 59 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQLKNI 184
GF++ +K + RY VK R R DY + VV +K +
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDYRVQ---VVSVKRV 1128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,607,505
Number of Sequences: 59808
Number of extensions: 437535
Number of successful extensions: 1218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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