Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f03f
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.84 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 221 PHSTFTHQLNHREYFSTEQRGVYEHN 144
           PH  FT++++         +G+Y+HN
Sbjct: 609 PHKAFTYRMHGYASVVGPVKGIYQHN 634


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 135 KLIIMLVNASLFS*KIFSMIKLMGKSGMWDNCL 233
           K  + L  AS+F  +IF++I +M   G W  CL
Sbjct: 265 KATLFLNMASVFM-RIFNLICMMLLIGHWSGCL 296


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 RGVVKGKLIIMLVNASLFS*KIFSMIKLMGKSGMWDNCL 233
           R V + + +  L  AS+F  +IF++I +M   G W  CL
Sbjct: 227 RYVSQWEEVYFLNMASVFM-RIFNLICMMLLIGHWSGCL 264


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 446  VLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQ 348
            V+   +   L   +S    HHNV  H    RTQ
Sbjct: 1661 VISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQ 1693


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 68  KVVKNKQYFKRYQVKFKRRREGKTDYYARK--RLVVQLKN 181
           K  KN+  +++Y+   K R   KT+    K  +++  L N
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSN 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,969
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)