Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f03f
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   179   2e-45
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   178   3e-45

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  179 bits (435), Expect = 2e-45
 Identities = 97/199 (48%), Positives = 119/199 (59%)
 Frame = +2

Query: 56  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQLKNILYD*ADG*KWNVGQLSV 235
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ Q                     
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQ--------------------- 39

Query: 236 AHWDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 415
              DKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYA
Sbjct: 40  ---DKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYA 96

Query: 416 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 595
           AAY TG                          +++VEP D+    FR  LDVGL RTTTG
Sbjct: 97  AAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTG 155

Query: 596 ARVFGAMKGAVDGGLNVPH 652
            RVFGA+KGA+DGGL++PH
Sbjct: 156 NRVFGALKGALDGGLDIPH 174


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  178 bits (433), Expect = 3e-45
 Identities = 97/199 (48%), Positives = 119/199 (59%)
 Frame = +2

Query: 56  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQLKNILYD*ADG*KWNVGQLSV 235
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ Q                     
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQ--------------------- 39

Query: 236 AHWDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 415
              DKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYA
Sbjct: 40  ---DKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYA 96

Query: 416 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTG 595
           AAY TG                          +++VEP D+    FR  LDVGL RTTTG
Sbjct: 97  AAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTG 155

Query: 596 ARVFGAMKGAVDGGLNVPH 652
            RVFGA+KGA+DGGL++PH
Sbjct: 156 NRVFGALKGALDGGLDIPH 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,317
Number of Sequences: 28952
Number of extensions: 283361
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)