Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f02r
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    27   1.9  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    26   5.9  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.9  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 472 YKILLKRLNFKLCVKNSKYSIYFTMGFCDRYNLVLSFRTEANDIVDFNFLKTFL 311
           Y ++LKR   K   + + Y+I   +  CD++  V +FR   + IVD  F  + L
Sbjct: 180 YTVILKR---KFGFETAVYAIGL-LSACDKFETVNTFRLGLSKIVDEEFFSSVL 229


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 427 NSKYSIYFTMGFCDRYNLVLSFRTEANDIVD 335
           ++K  ++  +   D+YNL+ S   EA D+ D
Sbjct: 116 STKTRLHVDLASDDKYNLIASSEDEAKDLTD 146


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 511 YLIPEKK*VTTCQYKILLKRLNFKLCVKNSKYSIYF 404
           ++IP  K V   ++K LL+R      +KN  + I F
Sbjct: 188 HVIPASKLVVFTEHKSLLRRTGVAAIIKNISFDIPF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,570
Number of Sequences: 5004
Number of extensions: 44779
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)