Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f02r
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical
           protein F56D2.6b protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 265 FRNFISYRTLNSSNILKTSLKN*NQQYRLPR 357
           + NFI+YRT+ +++ ++T L     +Y L R
Sbjct: 589 YDNFINYRTMKTADTVRTQLSRVMDKYNLRR 619


>U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical
           protein F56D2.6a protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 265 FRNFISYRTLNSSNILKTSLKN*NQQYRLPR 357
           + NFI+YRT+ +++ ++T L     +Y L R
Sbjct: 589 YDNFINYRTMKTADTVRTQLSRVMDKYNLRR 619


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,683
Number of Sequences: 27780
Number of extensions: 246187
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)