Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f02r
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    31   0.72 
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    31   0.72 
At5g07140.1 68418.m00814 protein kinase family protein contains ...    28   6.7  
At5g61650.1 68418.m07735 cyclin family protein similar to cyclin...    27   8.9  

>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 39  MYFFDYFTCTHKSTILFNFEHNNITSSCVLCAHIFLNM*IRTMYYT-KIIIFSIKILD 209
           ++F+ Y T   K   L +F  +  T SC + +  F NM      YT + I F  +IL+
Sbjct: 47  IFFYAYSTTRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILN 104


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 39  MYFFDYFTCTHKSTILFNFEHNNITSSCVLCAHIFLNM*IRTMYYT-KIIIFSIKILD 209
           ++F+ Y T   K   L +F  +  T SC + +  F NM      YT + I F  +IL+
Sbjct: 47  IFFYAYSTTRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTDETIQFMTRILN 104


>At5g07140.1 68418.m00814 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 583

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 291 CSIRNKIPEFESVLINKYLFARCWQPC 211
           C +R  IP+ E   + KYL  +CW  C
Sbjct: 538 CGLRPDIPK-ECPQVLKYLMIKCWNTC 563


>At5g61650.1 68418.m07735 cyclin family protein similar to cyclin 2
           [Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
           cruzi] GI:12005317; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 219

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 93  FEHNNITSSCVLCAHIFLNM*IRTMYYTKIIIFSIKILDYTAANIS 230
           FE+ N + SC + A+I+L+  ++   +  I  F++  L  T+  +S
Sbjct: 70  FEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVS 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,806
Number of Sequences: 28952
Number of extensions: 204972
Number of successful extensions: 325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)