Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f02f
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.7  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   6.7  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 127  WRGCSASCDAEDGTTGAFDDGNSNPGDKLEGSDAAPDDPVHLKRRVGLFSGVALIV 294
            W G SA+ +    TTG F  GN+     L  S A  + P+     V LF  +  ++
Sbjct: 1509 WNG-SATYNYTYYTTGGFTGGNNTNVTGLYPSSAGANKPIAYLTFVSLFVYIVTLI 1563


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 451 DDVFIVPNSAYASAPSNESRP 389
           DD F+V N+A +  P++ S+P
Sbjct: 311 DDPFVVSNTANSDEPASSSKP 331


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 226 AAPDDPVHLKRRVGLFSGVALIVGTMIGSGIFVSPLGF 339
           + P D VH+ +  G FS V  +  T++G+GI   P  F
Sbjct: 9   SGPAD-VHIGK-AGFFSSVINLANTILGAGILSLPNAF 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,523
Number of Sequences: 5004
Number of extensions: 62398
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)