Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f02f
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    26   0.26 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.26 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 556 IMAICDGFKTNVDTHEKRNAGGPP 485
           I AI D F  + D   + N GGPP
Sbjct: 12  ISAILDSFSVSYDKRVRPNYGGPP 35


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 556 IMAICDGFKTNVDTHEKRNAGGPP 485
           I AI D F  + D   + N GGPP
Sbjct: 12  ISAILDSFSVSYDKRVRPNYGGPP 35


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +1

Query: 64   HHNEQPTGNACNGSTREGGLVWRGCSASCDAEDGTTGAFDDGNS---NPGDKL 213
            H N QPT N C+   R         + S  AE G+  A  + +    +PG+ L
Sbjct: 871  HENNQPTMNKCSDRKRPASQ-----ATSVKAEPGSIMAMSESSKKVLSPGELL 918


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 63  HCSKHRAVCEESRPLMTQKRL 1
           HC  HRA C     L T+ RL
Sbjct: 128 HCELHRAACHSGSSL-TKSRL 147


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 341 GAYRLSGHKLHHLDGMWPALVAWSACVCGIRDNEYIIWR 457
           G Y L  H +HH +    A++  S  +C      Y   R
Sbjct: 272 GVYHLDNHHVHHAN--HHAILGHSGFLCERHQKRYFFGR 308


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 279 PTEESHPSLEVNRVVRSCVRP 217
           PT + H  + VNR + S V+P
Sbjct: 253 PTVQQHQPVTVNRQLNSDVQP 273


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 497 RIPLFMGIDIGFKTITNGHYLPKLR 571
           +IPL M   I  K+I N  Y PK R
Sbjct: 534 KIPLRMTAGIDPKSIFNSGYRPKPR 558


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 437 NEYIIWR*IRLFHGRLRGPTR-IPLFMG 517
           +EY +WR  R+ +G  + P   + +F G
Sbjct: 143 DEYYVWRDARIVNGTRQPPNNWLSVFWG 170


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 102 EHTRR--RIGLARVLSQLRCRRRHD 170
           EH  R  +IG++R +S LR   +H+
Sbjct: 429 EHRIRHSQIGISRAMSALRILEKHE 453


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 567 FAKYAVEPFVAECEPPD 617
           F  Y + PF  +C P D
Sbjct: 344 FLMYVIVPFCPDCCPSD 360


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 567 FAKYAVEPFVAECEPPD 617
           F  Y + PF  +C P D
Sbjct: 344 FLMYVIVPFCPDCCPSD 360


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 383 GMWPALVAWSACVCGIRDNEYIIWR*IRLFHGRLRGPTRIPLFMGI 520
           GMW + + +   V G+      +WR   L +    G   +P F+ +
Sbjct: 20  GMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIAL 65


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 383 GMWPALVAWSACVCGIRDNEYIIWR*IRLFHGRLRGPTRIPLFMGI 520
           GMW + + +   V G+      +WR   L +    G   +P F+ +
Sbjct: 73  GMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIAL 118


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 567 FAKYAVEPFVAECEPPD 617
           F  Y + PF  +C P D
Sbjct: 344 FLMYVIVPFCPDCCPSD 360


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 235 PELRPTPPACLL 200
           PE +PTPP+  L
Sbjct: 294 PETQPTPPSATL 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,392
Number of Sequences: 438
Number of extensions: 4736
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)