Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10f02f
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05940.1 68414.m00623 amino acid permease family protein low ...    31   0.81 
At2g43050.1 68415.m05342 pectinesterase family protein contains ...    30   1.1  
At3g12460.1 68416.m01551 hypothetical protein                          30   1.4  
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ...    29   1.9  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    29   3.3  
At1g12600.1 68414.m01463 hypothetical protein                          29   3.3  
At4g17770.1 68417.m02652 glycosyl transferase family 20 protein ...    28   5.7  
At4g05145.1 68417.m00771 hypothetical protein                          28   5.7  
At1g33600.1 68414.m04159 leucine-rich repeat family protein cont...    28   5.7  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    27   7.6  

>At1g05940.1 68414.m00623 amino acid permease family protein low
           similarity to SP|P30823 High-affinity cationic amino
           acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
           Pfam profile PF00324: Amino acid permease
          Length = 569

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 250 LKRRVGLFSGVALIVGTMIGSGIFV 324
           L RR+GLF  + L VG  IG+G+FV
Sbjct: 48  LVRRLGLFDLILLGVGASIGAGVFV 72


>At2g43050.1 68415.m05342 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 52  LRAMHHNEQPTGNACNGSTREGGLVWRGCSAS---CDAEDGTTGAFDDGN 192
           L+++ + E   GN+  GS+  G + W GC  S    +AE  T  +F DGN
Sbjct: 455 LKSLFYGEY--GNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGN 502


>At3g12460.1 68416.m01551 hypothetical protein
          Length = 242

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 445 HHLALNTPISWTPSGAHPHSSFHGYR 522
           H L +   + WTPSG HP S    YR
Sbjct: 53  HPLVVGVGVQWTPSGYHPASPPVSYR 78


>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 633

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 13  CHERPRFFTHSTVLRAMHHNEQPTGNACNGSTREGGLVWR-GCSASCDAEDGTTGAFDDG 189
           CH R +      +L+A+   E     + NG +  GG V R   +  C  EDG  G  DDG
Sbjct: 557 CHSRCKT---PFILKALSQTEDYCICSFNGGS--GGCVVRLNLTCGCGVEDGGGGYIDDG 611

Query: 190 NSN 198
             N
Sbjct: 612 RGN 614


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = +2

Query: 20  RGR-DSSHTARCFEQCITMNSRQGMHAT--GAHAKADWFGAGAQPAAMPK-TARRERSTM 187
           RGR  S+   RC+E+C+ +  R    +T  G+ +     G+G       K  A  E    
Sbjct: 301 RGRIQSTLRIRCYERCLAIQGRHRSKSTSAGSDSNRSSRGSGVMHLLREKYKANSENIET 360

Query: 188 ATQTQETSWRGR 223
              T   S RGR
Sbjct: 361 GASTSHASTRGR 372


>At1g12600.1 68414.m01463 hypothetical protein
          Length = 349

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 622 KLSG---GSHSATKGSTAYLAKLRQIM 551
           KLSG   GSH  TKGS AYL    QIM
Sbjct: 90  KLSGVLMGSHGLTKGSLAYLNYPAQIM 116


>At4g17770.1 68417.m02652 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 862

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 496 PHSSFHGYRHWF*NHHKWPLFA*ASPNTP 582
           P   F  Y H F   H WPLF    P TP
Sbjct: 138 PPELFTKYYHGFCKQHLWPLFHYMLPLTP 166


>At4g05145.1 68417.m00771 hypothetical protein
          Length = 219

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 158 KTARRERSTMATQTQE-TSWRGRTQLRTTLFTSRDGW 265
           K   R      T+T++   WRG++ +  T F++RD W
Sbjct: 4   KEKNRRIQIHGTETEDKVLWRGKSDVFRTTFSTRDTW 40


>At1g33600.1 68414.m04159 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to
           gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
          Length = 478

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 398 EQATCHPNDEA--YAH*AGTRQKPRG 327
           E ATCHP+DEA   A  +G  Q P G
Sbjct: 24  EAATCHPDDEAGLLAFKSGITQDPTG 49


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 436  Q*IHHLALNTPISWTPSGAHPHSSFHGY 519
            Q +HHL L   + WT S    H S HGY
Sbjct: 2988 QILHHLGLVWDLRWTTSS---HQSVHGY 3012


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,297
Number of Sequences: 28952
Number of extensions: 376169
Number of successful extensions: 1093
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)